Job Description O50581 Confidence 99.97% Date Tue Jul 17 17:05:03 BST 2012 Rank 55 Aligned Residues 290 % Identity 17% Template c3h1tA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:type i site-specific restriction-modification PDBTitle: the fragment structure of a putative hsdr subunit of a type2 i restriction enzyme from vibrio vulnificus yj016 Resolution 2.30 Å

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		262	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.										.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.
Predicted Secondary structure																																																							.	.	.	.	.	.	.	.	.
Query SS confidence																																																							.	.	.	.	.	.	.	.	.
Query Sequence		P	F	E	L	T	E	A	Q	K	S	S	V	N	E	I	F	R	D	L	K	A	P	I	R	M	H	R	L	L	Q	G	D	V	G	S	G	K	T	V	V	A	A	I	C	M	Y	A	L	K	T	A	G	Y	.	.	.	.	.	.	.	.	.	Q	S	A	L	M	V	P	T	E	I	L	A	E	Q	H	A	E	S
Query Conservation																																																							.	.	.	.	.	.	.	.	.
Alig confidence																										.																													.	.	.	.	.	.	.	.	.
Template Conservation																										.
Template Sequence		H	H	V	P	R	Y	Y	Q	Q	I	A	I	N	R	A	V	Q	S	V	L	Q	G	K	K	.	R	S	L	I	T	X	A	T	G	T	G	K	T	V	V	A	F	Q	I	S	W	K	L	W	S	A	R	W	N	R	T	G	D	Y	R	K	P	R	I	L	F	L	A	D	T	F	T	P	F	G	D	A	R	H	K
Template Known Secondary structure																						T	T		S	.								T	T	S																T	T			S	S		S	S	S												T	T	T		S	S
Template Predicted Secondary structure																										.
Template SS confidence
		172	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.		.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250
		333	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.				.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																				.	.	.
Query SS confidence																																																				.	.	.
Query Sequence		L	M	A	L	F	G	D	S	M	N	V	A	L	L	T	G	S	V	K	G	K	K	R	K	I	L	L	E	Q	L	E	N	G	T	I	D	C	L	I	G	T	H	A	L	I	Q	D	D	V	I	.	.	.	F	H	N	V	G	L	V	I	T	D	E	Q	H	R	F	G	V	N	Q	R	Q	L	L	R	E	K	G
Query Conservation																																																				.	.	.
Alig confidence							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.	.														.	.	.	.	.	.
Template Conservation							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																			.	.	.	.	.	.
Template Sequence		I	E	G	V	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	S	R	E	I	Y	F	A	I	Y	Q	S	I	P	G	L	Y	K	E	F	P	Q	D	F	F	D	L	I	I	I	D	E	C	H	.	.	.	.	.	.	W	R	E	I	L	E	Y	F
Template Known Secondary structure							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	S		S						G	G	G				G	G	G	G	S		T	T	S		S					S				.	.	.	.	.	.								S
Template Predicted Secondary structure							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																			.	.	.	.	.	.
Template SS confidence
		266	.	.	.	270																												.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.							.	.	.	.	.	310	.	.
		410	.	.	.	.	.	.	.	.	.	420	.																					.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.
Predicted Secondary structure														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	M	T	N	V	L	F	M	T	A	T	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	P	R	T	L	A	I	S	V	F	G	E	M	D	V	S	S	I	K	Q	L	P	K	G	R	K	P	I	I	T	T	W	A	K	H	E	Q	Y	D	K	V	L	M	Q	M	T	S	E
Query Conservation														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		E	P	A	F	Q	I	G	X	T	A	T	P	L	R	E	D	N	R	D	T	Y	R	Y	F	G	N	P	I	Y	T	Y	S	L	R	Q	G	I	D	D	G	F	L	A	P	Y	R	V	H	R	V	I	S	E	V	D	A	T	K	D	F	E	R	V	I	A	L	K	A	R	T	D	A	F	A	K	H	L	T	D	F
Template Known Secondary structure		T	T	S							S	S		S		T	T	T							S		S		S												T	S	S											T	T					S										T
Template Predicted Secondary structure
Template SS confidence
		330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.
		470	.	.				.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.		520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.
Predicted Secondary structure					.	.	.																																																.
Query SS confidence					.	.	.																																																.
Query Sequence		L	K	K	.	.	.	G	R	Q	A	Y	V	I	C	P	L	I	E	S	S	E	H	L	E	D	V	Q	N	V	V	A	L	Y	E	S	L	Q	Q	Y	Y	G	V	S	R	V	G	L	L	H	G	K	L	S	.	A	D	E	K	D	E	V	M	Q	K	F	S	N	H	E	I	N	V	L	V	S	T	T	V	V	E
Query Conservation					.	.	.																																																.
Alig confidence					.	.	.																				.	.																											.
Template Conservation																											.	.
Template Sequence		X	K	R	T	D	R	F	A	K	T	I	V	F	C	V	D	Q	E	H	A	D	E	X	R	R	.	.	A	L	N	N	L	N	S	D	L	S	R	K	H	P	D	Y	V	A	R	V	T	S	E	E	G	K	I	G	K	G	H	L	S	R	F	Q	E	L	E	T	S	T	P	V	I	L	T	T	S	Q	L	L	T
Template Known Secondary structure							T	T	S							S	S										.	.						T					T	T		T	T	S					S	S	T	T														T	T										S	S	T	T	T
Template Predicted Secondary structure																											.	.
Template SS confidence
		433	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.			.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510
		546	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.				.	.	.	.	.	.	.
Predicted Secondary structure																																						.	.	.
Query SS confidence																																						.	.	.
Query Sequence		V	G	V	N	V	P	N	A	T	F	M	M	I	Y	D	A	D	R	F	G	L	S	T	L	H	Q	L	R	G	R	V	G	R	S	D	Q	.	.	.	Q	S	Y	C	V	L	I
Query Conservation																																						.	.	.
Alig confidence																				.																		.	.	.
Template Conservation																				.
Template Sequence		T	G	V	D	A	P	T	C	K	N	V	V	L	A	R	V	V	N	.	S	X	S	E	F	K	Q	I	V	G	R	G	T	R	L	R	E	D	Y	G	K	L	W	F	N	I	I
Template Known Secondary structure		T	T				T	T								S				.										T	T	S				B	G	G	G	T	B	S
Template Predicted Secondary structure																				.
Template SS confidence
		511	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.		.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions