Job Description O50581 Confidence 100.00% Date Tue Jul 17 17:05:03 BST 2012 Rank 34 Aligned Residues 326 % Identity 20% Template c3fhtA_ PDB info PDB header:hydrolase/rna Chain: A: PDB Molecule:atp-dependent rna helicase ddx19b; PDBTitle: crystal structure of human dbp5 in complex with amppnp and rna Resolution 2.20 Å

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		252	.	.	.	.	.	.	.	260	.	.	.	.		.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.				.	.	.	.	.	320	.	.	.	.	.	.	.
Predicted Secondary structure															.																																																			.	.	.
Query SS confidence															.																																																			.	.	.
Query Sequence		D	Q	V	K	S	F	I	D	R	L	P	F	E	.	L	T	E	A	Q	K	S	S	V	N	E	I	F	R	D	L	K	A	P	I	R	M	H	R	L	L	Q	G	D	V	G	S	G	K	T	V	V	A	A	I	C	M	Y	A	L	K	T	A	G	Y	.	.	.	Q	S	A	L	M	V	P	T	E	I	L	A	E
Query Conservation															.																																																			.	.	.
Alig confidence															.															.	.	.	.																																	.	.	.
Template Conservation																														.	.	.	.
Template Sequence		P	Q	L	L	Q	G	V	Y	A	M	G	F	N	R	P	S	K	I	Q	E	N	A	L	P	L	M	L	A	.	.	.	.	E	P	P	Q	N	L	I	A	Q	S	Q	S	G	T	G	K	T	A	A	F	V	L	A	M	L	S	Q	V	E	P	A	N	K	Y	P	Q	C	L	C	L	S	P	T	Y	E	L	A	L
Template Known Secondary structure											T	T			S														S	.	.	.	.	S	S										T	T	S																T	T	S		S								S	S
Template Predicted Secondary structure																														.	.	.	.
Template SS confidence
		101	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.					.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.
		328	.	330	.	.	.	.	.	.	.	.	.			340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.							.	.	.	.	.	.	.	390	.	.	.	.	.
Predicted Secondary structure														.	.																																												.	.	.	.	.	.														.	.	.	.
Query SS confidence														.	.																																												.	.	.	.	.	.														.	.	.	.
Query Sequence		Q	H	A	E	S	L	M	A	L	F	G	D	.	.	S	M	N	V	A	L	L	T	G	S	V	K	G	K	K	R	K	I	L	L	E	Q	L	E	N	G	T	I	D	C	L	I	G	T	H	A	L	I	Q	D	D	V	I	.	.	.	.	.	.	F	H	N	V	G	L	V	I	T	D	E	Q	H	.	.	.	.
Query Conservation														.	.																																												.	.	.	.	.	.														.	.	.	.
Alig confidence														.	.														.	.	.	.	.	.	.																								.	.	.	.	.	.														.	.	.	.
Template Conservation																													.	.	.	.	.	.	.
Template Sequence		Q	T	G	K	V	I	E	Q	M	G	K	F	Y	P	E	L	K	L	A	Y	A	V	R	G	N	K	L	.	.	.	.	.	.	.	E	R	G	Q	K	I	S	E	Q	I	V	I	G	T	P	G	T	V	L	D	W	C	S	K	L	K	F	I	D	P	K	K	I	K	V	F	V	L	D	E	A	D	V	M	I	A
Template Known Secondary structure											T	T	T	S	T	T								T	T				.	.	.	.	.	.	.		T	T						S														T	T	S		S	S		G	G	G								T						S
Template Predicted Secondary structure																													.	.	.	.	.	.	.
Template SS confidence
		177	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.								.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.
				396	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440					.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.																																														.	.	.	.
Query SS confidence		.	.																																														.	.	.	.
Query Sequence		.	.	R	F	G	V	N	Q	R	Q	L	L	R	E	K	G	A	M	T	N	V	L	F	M	T	A	T	P	I	P	R	T	L	A	I	S	V	F	G	E	M	D	V	S	S	I	K	.	.	.	.	Q	L	P	K	G	R	K	P	I	I	T	T	W	A	K	H	E	Q	Y	D	K	V	L	M	Q	M	T	S	E
Query Conservation		.	.																																														.	.	.	.
Alig confidence		.	.																																														.	.	.	.
Template Conservation
Template Sequence		T	Q	G	H	Q	D	Q	S	I	R	I	Q	R	M	L	P	R	N	C	Q	M	L	L	F	S	A	T	F	E	D	S	V	W	K	F	A	Q	K	V	V	P	D	P	N	V	I	K	L	K	R	E	E	E	T	L	D	T	I	K	Q	Y	Y	V	L	C	S	S	R	D	E	K	F	Q	A	L	C	N	L	Y	G
Template Known Secondary structure		T	T	T	T										T	S		T	T								S														S	S	S								G	G	G	S	S		T	T									S	S
Template Predicted Secondary structure
Template SS confidence
		250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.
		470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	K	K	G	R	Q	A	Y	V	I	C	P	L	I	E	S	S	E	H	L	E	D	V	Q	N	V	V	A	L	Y	E	S	L	Q	Q	Y	Y	G	V	S	R	V	G	L	L	H	G	K	L	S	A	D	E	K	D	E	V	M	Q	K	F	S	N	H	E	I	N	V	L	V	S	T	T	V	V	E	V	G	V	N
Query Conservation
Alig confidence																	.	.	.	.	.	.	.	.	.												.	.
Template Conservation																	.	.	.	.	.	.	.	.	.												.	.
Template Sequence		A	I	T	I	A	Q	A	M	I	F	C	H	T	R	K	.	.	.	.	.	.	.	.	.	T	A	S	W	L	A	A	E	L	S	K	.	.	E	G	H	Q	V	A	L	L	S	G	E	M	M	V	E	Q	R	A	A	V	I	E	R	F	R	E	G	K	E	K	V	L	V	T	T	N	V	C	A	R	G	I	D
Template Known Secondary structure				S	S	S							S	S			.	.	.	.	.	.	.	.	.												.	.	T	T								T	T	S														T	T	S		S						G	G	G	T	S	S
Template Predicted Secondary structure																	.	.	.	.	.	.	.	.	.												.	.
Template SS confidence
		330	.	.	.	.	.	.	.	.	.	340	.	.	.	.										.	.	.	.	.	350	.	.	.	.	.			.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.
		550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.						.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																		.	.	.	.	.
Query SS confidence																		.	.	.	.	.
Query Sequence		V	P	N	A	T	F	M	M	I	Y	D	A	D	R	F	G	.	.	.	.	.	L	S	T	L	H	Q	L	R	G	R	V	G	R	S	D	Q	Q	S	Y	C	V	L	I	A	S	P	K	T	E	T	G	I	E	R
Query Conservation																		.	.	.	.	.
Alig confidence																		.	.	.	.	.
Template Conservation
Template Sequence		V	E	Q	V	S	V	V	I	N	F	D	L	P	V	D	K	D	G	N	P	D	N	E	T	Y	L	H	R	I	G	R	T	G	R	F	G	K	R	G	L	A	V	N	M	V	D	S	K	H	S	M	N	I	L	N
Template Known Secondary structure			T	T							S	S			B		S	S	S	S	B										T	T	S	S		T	T											S
Template Predicted Secondary structure
Template SS confidence
		399	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions