Return to main results Retrieve Phyre Job Id

Job DescriptionO50581
Confidence93.21%DateTue Jul 17 17:05:03 BST 2012
Rank382Aligned Residues31
% Identity26%Templatec3co5B_
PDB info PDB header:transcription regulatorChain: B: PDB Molecule:putative two-component system transcriptional response PDBTitle: crystal structure of sigma-54 interaction domain of putative2 transcriptional response regulator from neisseria gonorrhoeae
Resolution2.40 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   270.........280.........290.........300..
Predicted Secondary structure 









Query SS confidence 
































Query Sequence  KSSVNEIFRDLKAPIRMHRLLQGDVGSGKTVVA
Query Conservation    

  
   
        

 
 





 

Alig confidence 














..















Template Conservation        
   
    ..



 

 



   
Template Sequence  QEXNREVEAAAKRTS. . PVFLTGEAGSPFETVA
Template Known Secondary structure  T
SS..
TT

Template Predicted Secondary structure 



..





Template SS confidence 
































   143......150....... ..160.........170...
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions