Job Description O50581 Confidence 100.00% Date Tue Jul 17 17:05:03 BST 2012 Rank 10 Aligned Residues 316 % Identity 17% Template c3bxzA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:preprotein translocase subunit seca; PDBTitle: crystal structure of the isolated dead motor domains from2 escherichia coli seca Resolution 3.00 Å

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		251	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330
Predicted Secondary structure
Query SS confidence
Query Sequence		I	D	Q	V	K	S	F	I	D	R	L	P	F	E	L	T	E	A	Q	K	S	S	V	N	E	I	F	R	D	L	K	A	P	I	R	M	H	R	L	L	Q	G	D	V	G	S	G	K	T	V	V	A	A	I	C	M	Y	A	L	K	T	A	G	Y	Q	S	A	L	M	V	P	T	E	I	L	A	E	Q	H	A
Query Conservation
Alig confidence																														.	.	.	.	.	.	.	.
Template Conservation																														.	.	.	.	.	.	.	.
Template Sequence		A	V	V	R	E	A	S	K	R	V	F	G	M	R	H	F	D	V	Q	L	L	G	G	M	V	L	N	E	.	.	.	.	.	.	.	.	R	C	I	A	E	M	R	T	G	E	G	K	T	L	T	A	T	L	P	A	Y	L	N	A	L	T	G	K	G	V	H	V	V	T	V	N	D	Y	L	A	Q	R	D	A
Template Known Secondary structure												T															T	T	T	.	.	.	.	.	.	.	.	T							T	T	S						T								T	T	S	S	S							S	S
Template Predicted Secondary structure																														.	.	.	.	.	.	.	.
Template SS confidence
		69	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.									.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
		331	.	.	.	.	.	.	.	.		340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.													.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.
Predicted Secondary structure											.																																							.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence											.																																							.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		E	S	L	M	A	L	F	G	D	.	S	M	N	V	A	L	L	T	G	S	V	K	G	K	K	R	K	I	L	L	E	Q	L	E	N	G	T	I	D	C	L	I	G	T	H	A	L	I	.	.	.	.	.	.	.	.	.	.	.	.	Q	D	D	V	I	F	H	N	V	G	L	V	I	T	D	E	Q	H	R	F
Query Conservation											.																																							.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence											.																					.	.	.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																.	.	.	.	.	.
Template Sequence		E	N	N	R	P	L	F	E	F	L	G	L	T	V	G	I	N	L	P	G	M	P	A	P	A	K	R	E	A	Y	.	.	.	.	.	.	A	A	D	I	T	Y	G	T	N	N	E	Y	G	F	D	Y	L	R	D	N	M	A	F	S	P	E	E	R	V	Q	R	K	L	H	Y	A	L	V	D	E	V	D	S	I
Template Known Secondary structure			T	T							T	T								T	T											.	.	.	.	.	.		S	S																		T		S	S	G	G	G					S								T
Template Predicted Secondary structure																																.	.	.	.	.	.
Template SS confidence
		141	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170							.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.
		398	.	400	.	.											.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.				.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.
Predicted Secondary structure							.	.	.	.	.	.	.	.	.	.																																														.	.	.
Query SS confidence							.	.	.	.	.	.	.	.	.	.																																														.	.	.
Query Sequence		G	V	N	Q	R	.	.	.	.	.	.	.	.	.	.	Q	L	L	R	E	K	G	A	M	T	N	V	L	F	M	T	A	T	P	I	P	R	T	L	A	I	S	V	F	G	E	M	D	V	S	S	I	K	Q	L	P	K	G	R	K	.	.	.	P	I	I	T	T	W	A	K	H	E	Q	Y	D	K	V	L	M
Query Conservation							.	.	.	.	.	.	.	.	.	.																																														.	.	.
Alig confidence							.	.	.	.	.	.	.	.	.	.																																														.	.	.
Template Conservation
Template Sequence		L	I	D	E	A	R	T	P	L	I	I	L	A	S	I	T	F	Q	N	Y	F	R	L	Y	E	K	L	A	G	M	T	G	T	A	D	T	E	A	F	E	F	S	S	I	Y	K	L	D	T	V	V	V	P	T	N	R	P	M	I	R	K	D	L	P	D	L	V	Y	M	T	E	A	E	K	I	Q	A	I	I	E
Template Known Secondary structure			T	G	G	G	S												G	G	G	G	G	G	S	S							S			S	T	T	T	T						S										S	S													S	S
Template Predicted Secondary structure
Template SS confidence
		215	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.
		465	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	M	T	S	E	L	K	K	G	R	Q	A	Y	V	I	C	P	L	I	E	S	S	E	H	L	E	D	V	Q	N	V	V	A	L	Y	E	S	L	Q	Q	Y	Y	G	V	S	R	V	G	L	L	H	G	K	L	S	A	D	E	K	D	E	V	M	Q	K	F	S	N	H	E	I	N	V	L	V	S	T	T	V	V
Query Conservation
Alig confidence																						.	.	.	.	.	.	.	.	.												.	.																													.	.
Template Conservation																						.	.	.	.	.	.	.	.	.												.	.																													.	.
Template Sequence		D	I	K	E	R	T	A	K	G	Q	P	V	L	V	G	T	I	S	I	E	.	.	.	.	.	.	.	.	.	K	S	E	L	V	S	N	E	L	T	K	.	.	A	G	I	K	H	N	V	L	N	A	K	F	H	A	N	E	A	A	I	V	A	Q	A	G	Y	P	A	A	.	.	V	T	I	A	T	N	M	A
Template Known Secondary structure										T								S	S			.	.	.	.	.	.	.	.	.												.	.	T	S								S	S										T	T	T	T	S	S	S		.	.						T	T	S
Template Predicted Secondary structure																						.	.	.	.	.	.	.	.	.												.	.																													.	.
Template SS confidence
		441	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460										.	.	.	.	.	.	.	.	.	470	.			.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.			500	.	.	.	.	.	.	.
		545	.	.	.	.	550	.	.	.	.																																						.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.
Predicted Secondary structure												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		E	V	G	V	N	V	P	N	A	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	M	M	I	Y	D	A	D	R	F	G	L	S	T	L	H	Q	L	R	G	R	V	G	R	S	D	Q	Q	S	Y	C	V	L
Query Conservation												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.
Template Conservation																																																										.
Template Sequence		G	R	G	T	D	I	V	L	G	G	S	W	Q	A	E	V	A	A	L	E	N	P	T	A	E	Q	I	E	K	I	K	A	D	W	Q	V	R	H	D	A	V	L	E	A	G	G	L	H	I	I	G	T	E	R	H	E	.	S	R	R	I	D	N	Q	L	R	G	R	S	G	R	Q	G	D	A	G	S	S	R	F
Template Known Secondary structure		S	T	T					T	T			T					T	T		S				T	T	T	T					T	T											T	T	S						S	S			S	.	S	T	T								T	S	S	G	G	G
Template Predicted Secondary structure																																																										.
Template SS confidence
		508	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.		.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.
		588	.	590	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	A	S	P	K	T	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Y	L	S	M	E	D	A
Template Known Secondary structure					G	G	G
Template Predicted Secondary structure
Template SS confidence
		587	.	.	590	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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