Job Description O50581 Confidence 99.85% Date Tue Jul 17 17:05:03 BST 2012 Rank 85 Aligned Residues 193 % Identity 17% Template c3berA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:probable atp-dependent rna helicase ddx47; PDBTitle: human dead-box rna-helicase ddx47, conserved domain i in complex with2 amp Resolution 1.40 Å

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		237	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.		.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.
Predicted Secondary structure																														.																																																			.
Query SS confidence																														.																																																			.
Query Sequence		L	E	K	S	S	D	E	A	I	E	I	D	Y	D	I	D	Q	V	K	S	F	I	D	R	L	P	F	E	.	L	T	E	A	Q	K	S	S	V	N	E	I	F	R	D	L	K	A	P	I	R	M	H	R	L	L	Q	G	D	V	G	S	G	K	T	V	V	A	A	I	C	M	Y	A	L	K	T	A	G	Y	.
Query Conservation																														.																																																			.
Alig confidence																							.							.															.	.	.	.	.	.																															.
Template Conservation																							.																						.	.	.	.	.	.
Template Sequence		E	E	E	E	T	K	T	F	K	D	L	G	V	T	D	V	L	C	E	A	C	.	D	Q	L	G	W	T	K	P	T	K	I	Q	I	E	A	I	P	L	A	L	Q	.	.	.	.	.	.	G	R	D	I	I	G	L	A	E	T	G	S	G	K	T	G	A	F	A	L	P	I	L	N	A	L	L	E	T	P	Q
Template Known Secondary structure									T	G	G	G	T										.			T	T			S														T	.	.	.	.	.	.	T									T	T	S																	S
Template Predicted Secondary structure																							.																						.	.	.	.	.	.
Template SS confidence
		19	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.		40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60							.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.
				315	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.		340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.							.	.	.
Predicted Secondary structure		.	.																										.																																												.	.	.	.	.	.
Query SS confidence		.	.																										.																																												.	.	.	.	.	.
Query Sequence		.	.	Q	S	A	L	M	V	P	T	E	I	L	A	E	Q	H	A	E	S	L	M	A	L	F	G	D	.	S	M	N	V	A	L	L	T	G	S	V	K	G	K	K	R	K	I	L	L	E	Q	L	E	N	G	T	I	D	C	L	I	G	T	H	A	L	I	Q	D	D	V	I	.	.	.	.	.	.	F	H	N
Query Conservation		.	.																										.																																												.	.	.	.	.	.
Alig confidence		.	.																										.																							.	.	.	.																		.	.	.	.	.	.
Template Conservation																																																				.	.	.	.
Template Sequence		R	L	F	A	L	V	L	T	P	T	R	E	L	A	F	Q	I	S	E	Q	F	E	A	L	G	S	S	I	G	V	Q	S	A	V	I	V	G	G	I	D	S	M	S	Q	S	L	A	L	A	K	.	.	.	.	K	P	H	I	I	I	A	T	P	G	R	L	I	D	H	L	E	N	T	K	G	F	N	L	R	A
Template Known Secondary structure		S	S							S	S																G	G	G	T								T	T	S											T	.	.	.	.			S																S	T	T				T	T
Template Predicted Secondary structure																																																				.	.	.	.
Template SS confidence
		92	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.					.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.
		386	.	.	.	390	.	.	.	.	.	.						.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440
Predicted Secondary structure													.	.	.	.	.
Query SS confidence													.	.	.	.	.
Query Sequence		V	G	L	V	I	T	D	E	Q	H	R	.	.	.	.	.	F	G	V	N	Q	R	Q	L	L	R	E	K	G	A	M	T	N	V	L	F	M	T	A	T	P	I	P	R	T	L	A	I	S	V	F	G	E	M	D	V	S	S	I	K
Query Conservation													.	.	.	.	.
Alig confidence													.	.	.	.	.
Template Conservation
Template Sequence		L	K	Y	L	V	M	D	E	A	D	R	I	L	N	M	D	F	E	T	E	V	D	K	I	L	K	V	I	P	R	D	R	K	T	F	L	F	S	A	T	M	T	K	K	V	Q	K	L	Q	R	A	A	L	K	N	P	V	K	C	A
Template Known Secondary structure									S							T	T											S	S		S	S	S							S	S														S	S
Template Predicted Secondary structure
Template SS confidence
		168	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions