Job Description O50581 Confidence 100.00% Date Tue Jul 17 17:05:03 BST 2012 Rank 37 Aligned Residues 258 % Identity 21% Template c2z83A_ PDB info PDB header:viral protein Chain: A: PDB Molecule:helicase/nucleoside triphosphatase; PDBTitle: crystal structure of catalytic domain of japanese2 encephalitis virus ns3 helicase/nucleoside triphosphatase3 at a resolution 1.8 Resolution 1.80 Å

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		283	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.		310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.
Predicted Secondary structure																													.
Query SS confidence																													.
Query Sequence		P	I	R	M	H	R	L	L	Q	G	D	V	G	S	G	K	T	V	V	A	A	I	C	M	Y	A	L	.	K	T	A	G	Y	Q	S	A	L	M	V	P	T	E	I	L	A	E	Q	H	A	E	S	L	M	A	L	F	G	D	S	M	N	V	A	L	L	T	G	S	V	K	G	K	K	R	K	I	L	L	E	Q
Query Conservation																													.
Alig confidence																													.																										.	.	.	.	.											.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																							.	.	.	.	.											.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		R	K	R	Q	M	T	V	L	D	L	H	P	G	S	G	K	T	R	K	I	L	P	Q	I	I	K	D	A	I	Q	Q	R	L	R	T	A	V	L	A	P	T	R	V	V	A	A	E	M	A	E	A	L	R	.	.	.	.	.	G	L	P	V	R	Y	Q	T	G	N	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		S	T	T									T	T	S		T	T	T	T												T	T									S											T	T	.	.	.	.	.	T	S									.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																							.	.	.	.	.											.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		185	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.						.	.	240	.	.	.	.	.	.	.
		362	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.				.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.						.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.
Predicted Secondary structure																						.	.	.																							.	.	.	.	.
Query SS confidence																						.	.	.																							.	.	.	.	.
Query Sequence		L	E	N	G	T	I	D	C	L	I	G	T	H	A	L	I	Q	D	D	V	.	.	.	I	F	H	N	V	G	L	V	I	T	D	E	Q	H	R	F	G	V	N	Q	R	Q	.	.	.	.	.	L	L	R	E	K	G	A	M	T	N	V	L	F	M	T	A	T	P	I	P	R	T	L	A	I	S	V	F	G	E
Query Conservation																						.	.	.																							.	.	.	.	.
Alig confidence		.	.	.	.	.																.	.	.																							.	.	.	.	.
Template Conservation		.	.	.	.	.
Template Sequence		.	.	.	.	.	E	I	V	D	V	M	C	H	A	T	L	T	H	R	L	M	S	P	N	V	P	N	Y	N	L	F	V	M	D	E	A	H	F	T	D	P	A	S	I	A	A	R	G	Y	I	A	T	K	V	E	L	G	E	A	A	A	I	F	M	T	A	T	P	P	G	T	T	D	P	F	P	D	S	N	A
Template Known Secondary structure		.	.	.	.	.		S															S							S					S	S	T	T			S																T	T	S								S	S		T	T				S	S				S	S
Template Predicted Secondary structure		.	.	.	.	.
Template SS confidence
							256	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330
		434	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	D	V	S	S	I	K	Q	L	P	K	G	R	K	P	I	I	T	T	W	A	K	H	E	Q	Y	D	K	V	L	M	Q	M	T	S	E	L	K	K	G	R	Q	A	Y	V	I	C	P	L	I	E	S	S	E	H	L	E	D	V	Q	N	V	V	A	L	Y	E	S	L	Q	Q	Y	Y	G	V	S	R	V	G	L
Query Conservation
Alig confidence																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.	.												.	.
Template Conservation																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.	.												.	.
Template Sequence		P	I	H	D	L	Q	D	E	I	P	D	R	A	W	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	G	Y	E	W	I	T	E	Y	A	G	K	T	V	W	F	V	A	S	V	K	.	.	.	.	.	.	.	.	.	M	G	N	E	I	A	M	C	L	Q	R	.	.	A	G	K	K	V	I	Q
Template Known Secondary structure												S	S			S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S										S							S				.	.	.	.	.	.	.	.	.												.	.	T	T
Template Predicted Secondary structure																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.	.	.	.												.	.
Template SS confidence
		332	.	.	.	.	.	.	.	340	.	.	.	.	.	.																.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.										.	.	370	.	.	.	.	.	.	.	.			.	380	.	.	.	.	.
		514	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550																		.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.
Predicted Secondary structure																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	H	G	K	L	S	A	D	E	K	D	E	V	M	Q	K	F	S	N	H	E	I	N	V	L	V	S	T	T	V	V	E	V	G	V	N	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	N	A	T	F	M	M	I	Y	D	A	D	R	F	G	L	S	T	L	H	Q	L	R	G	R	V
Query Conservation																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence														.	.	.	.																	.					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														.
Template Conservation														.	.	.	.																	.																																			.
Template Sequence		L	N	R	K	S	Y	D	T	E	Y	P	K	.	.	.	.	C	K	N	G	D	W	D	F	V	I	T	T	D	I	S	A	.	N	F	G	A	S	R	V	I	D	C	R	K	S	V	K	P	T	I	L	E	E	G	E	G	R	V	I	L	G	N	P	S	P	I	.	T	S	A	S	A	A	Q	R	R	G	R	V
Template Known Secondary structure			S	T	T						G	G	G	.	.	.	.	S	S	S				S					S	S				.			S		S																S	S	S							S					.										T	T	S
Template Predicted Secondary structure														.	.	.	.																	.																																			.
Template SS confidence
		386	.	.	.	390	.	.	.	.	.	.	.					.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.		.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.		.	.	450	.	.	.	.	.	.	.	.	.
		577	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	R	S	D	Q	Q	S	Y	C	V	L	I	A	S	P	K	T	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	R	N	P	N	Q	V	G	D	E	Y	H	Y	G	G	A	T	S
Template Known Secondary structure		S			T	T										S
Template Predicted Secondary structure
Template SS confidence
		463	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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