Job Description O50581 Confidence 99.85% Date Tue Jul 17 17:05:03 BST 2012 Rank 83 Aligned Residues 167 % Identity 19% Template c2yjtD_ PDB info PDB header:hydrolase inhibitor/hydrolase Chain: D: PDB Molecule:atp-dependent rna helicase srmb; PDBTitle: crystal structure of e. coli dead-box protein srmb bound to2 regulator of ribonuclease activity a (rraa) Resolution 2.90 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		446	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.			.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.
Predicted Secondary structure																													.	.
Query SS confidence																													.	.
Query Sequence		R	K	P	I	I	T	T	W	A	K	H	E	Q	Y	D	K	V	L	M	Q	M	T	S	E	L	K	K	.	.	G	R	Q	A	Y	V	I	C	P	L	I	E	S	S	E	H	L	E	D	V	Q	N	V	V	A	L	Y	E	S	L	Q	Q	Y	Y	G	V	S	R	V	G	L	L	H	G	K	L	S	A	D	E	K
Query Conservation																													.	.
Alig confidence																													.	.													.	.	.	.	.	.	.	.	.												.	.
Template Conservation																																											.	.	.	.	.	.	.	.	.												.	.
Template Sequence		R	K	K	I	H	Q	W	Y	Y	R	A	D	D	L	E	H	K	T	A	L	L	V	H	L	L	K	Q	P	E	A	T	R	S	I	V	F	V	R	K	R	E	.	.	.	.	.	.	.	.	.	R	V	H	E	L	A	N	W	L	R	E	.	.	A	G	I	N	N	C	Y	L	E	G	E	M	V	Q	G	K	R
Template Known Secondary structure													S	S													S	S	T	T			S						S	S	S		.	.	.	.	.	.	.	.	.												.	.										T	T	S
Template Predicted Secondary structure																																											.	.	.	.	.	.	.	.	.												.	.
Template SS confidence
		219	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.										260	.	.	.	.	.	.	.	.	.	270			.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.
		524	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	E	V	M	Q	K	F	S	N	H	E	I	N	V	L	V	S	T	T	V	V	E	V	G	V	N	V	P	N	A	T	F	M	M	I	Y	D	A	D	R	F	G	L	S	T	L	H	Q	L	R	G	R	V	G	R	S	D	Q	Q	S	Y	C	V	L	I	A	S	P	K	T	E	T	G	I	E	R	M	T	I	M
Query Conservation
Alig confidence																																										.
Template Conservation																																										.
Template Sequence		N	E	A	I	K	R	L	T	E	G	R	V	N	V	L	V	A	T	D	V	A	A	R	G	I	D	I	P	D	V	S	H	V	F	N	F	D	M	P	R	.	S	G	D	T	Y	L	H	R	I	G	R	T	A	R	A	G	R	K	G	T	A	I	S	L	V	E	A	H	D	H	L	L	L	G	K	V	G	R	Y
Template Known Secondary structure									S	S	T	T								T	G	G	G	S	S					S							S	S			S	.									G	G	G	S			S	S	S										G	G	G
Template Predicted Secondary structure																																										.
Template SS confidence
		288	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.		.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.
		604	.	.	.		.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.
Predicted Secondary structure						.
Query SS confidence						.
Query Sequence		T	Q	T	T	.	D	G	F	E	L	S	E	R	D	L	E	M	R	G	P	G	D
Query Conservation						.
Alig confidence						.
Template Conservation
Template Sequence		I	E	E	P	I	K	A	R	V	I	D	E	L	R	P	K	T	R	A	P	S	E
Template Known Secondary structure		S	S	S								S	S	S				S
Template Predicted Secondary structure
Template SS confidence
		367	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions