Job Description O50581 Confidence 99.04% Date Tue Jul 17 17:05:03 BST 2012 Rank 134 Aligned Residues 145 % Identity 27% Template c2xzlA_ PDB info PDB header:hydrolase/rna Chain: A: PDB Molecule:atp-dependent helicase nam7; PDBTitle: upf1-rna complex Resolution 2.40 Å

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		264	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.		.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.
Predicted Secondary structure																																																					.
Query SS confidence																																																					.
Query Sequence		E	L	T	E	A	Q	K	S	S	V	N	E	I	F	R	D	L	K	A	P	I	R	M	H	R	L	L	Q	G	D	V	G	S	G	K	T	V	V	A	A	I	C	M	Y	A	L	K	T	A	G	Y	.	Q	S	A	L	M	V	P	T	E	I	L	A	E	Q	H	A	E	S	L	M	A	L	F	G	D	S	M	N
Query Conservation																																																					.
Alig confidence																	.	.	.	.	.	.																															.																							.	.	.
Template Conservation																	.	.	.	.	.	.																																																						.	.	.
Template Sequence		Q	L	N	S	S	Q	S	N	A	V	S	H	V	L	Q	.	.	.	.	.	.	R	P	L	S	L	I	Q	G	P	P	G	T	G	K	T	V	T	S	A	T	I	V	Y	H	L	S	K	I	H	K	D	R	I	L	V	C	A	P	S	N	V	A	V	D	H	L	A	A	K	L	R	D	L	.	.	.	G	L	K
Template Known Secondary structure															T	T	.	.	.	.	.	.		S							S	T	T	S	S																									S	S														T	.	.	.	T
Template Predicted Secondary structure																	.	.	.	.	.	.																																																						.	.	.
Template SS confidence
		408	.	410	.	.	.	.	.	.	.	.	.	420	.	.							.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.				.	.	.
		343	.	.	.	.	.	.	350	.																																													.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.
Predicted Secondary structure											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	A	L	L	T	G	S	V	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	K	K	R	K	I	L	L	E	Q	L	E	N	G	T	I	D	C	L	I	G	T	H	A	L	I	Q
Query Conservation											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	V	R	L	T	A	K	S	R	E	D	V	E	S	S	V	S	N	L	A	L	H	N	L	V	G	R	G	A	K	G	E	L	K	N	L	L	K	L	K	D	E	V	G	E	L	S	A	S	D	T	K	R	F	V	K	L	V	R	K	T	E	A	E	I	L	N	K	A	D	V	V	C	C	T	C	V	G	A	G
Template Known Secondary structure								G	G	G	T	T	S			T	T	G	G	G	B							T	T			T													S																								T		S						T	T	G	G	G
Template Predicted Secondary structure
Template SS confidence
		479	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.
		379	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	D	V	I	F	H	N	V	G	L	V	I	T	D	E	Q	H	R	F	G	V	N	Q	R	Q	L	L	R	E	K	G	A	M	T	N	V	L	F	M
Query Conservation
Alig confidence
Template Conservation
Template Sequence		D	K	R	L	D	T	K	F	R	T	V	L	I	D	E	S	T	Q	A	S	E	P	E	C	L	I	P	I	V	K	G	A	K	Q	V	I	L	V	G
Template Known Secondary structure			T	T			S			S					T	T	G	G	G	S										T	T	T	B	S
Template Predicted Secondary structure
Template SS confidence
		559	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions