Job Description O50581 Confidence 100.00% Date Tue Jul 17 17:05:03 BST 2012 Rank 3 Aligned Residues 309 % Identity 24% Template c2xgjA_ PDB info PDB header:hydrolase/rna Chain: A: PDB Molecule:atp-dependent rna helicase dob1; PDBTitle: structure of mtr4, a dexh helicase involved in nuclear rna2 processing and surveillance Resolution 2.90 Å

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		261	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340
Predicted Secondary structure
Query SS confidence
Query Sequence		L	P	F	E	L	T	E	A	Q	K	S	S	V	N	E	I	F	R	D	L	K	A	P	I	R	M	H	R	L	L	Q	G	D	V	G	S	G	K	T	V	V	A	A	I	C	M	Y	A	L	K	T	A	G	Y	Q	S	A	L	M	V	P	T	E	I	L	A	E	Q	H	A	E	S	L	M	A	L	F	G	D	S
Query Conservation
Alig confidence																				.	.	.	.	.	.																																																								.
Template Conservation																				.	.	.	.	.	.																																																								.
Template Sequence		Y	P	F	T	L	D	P	F	Q	D	T	A	I	S	C	I	D	R	.	.	.	.	.	.	G	E	S	V	L	V	S	A	H	T	S	A	G	K	T	V	V	A	E	Y	A	I	A	Q	S	L	K	N	K	Q	R	V	I	Y	T	S	P	I	K	A	L	S	N	Q	K	Y	R	E	L	L	A	E	F	G	D	.
Template Known Secondary structure			S	S																.	.	.	.	.	.	T									T	T	S																T	T								S	S																S		.
Template Predicted Secondary structure																				.	.	.	.	.	.																																																								.
Template SS confidence
		146	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.							.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.
		341	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.						.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.						.	.	.	.	.	.	.	410
Predicted Secondary structure																																											.	.	.	.	.																						.	.	.	.	.
Query SS confidence																																											.	.	.	.	.																						.	.	.	.	.
Query Sequence		M	N	V	A	L	L	T	G	S	V	K	G	K	K	R	K	I	L	L	E	Q	L	E	N	G	T	I	D	C	L	I	G	T	H	A	L	I	Q	D	D	V	.	.	.	.	.	I	F	H	N	V	G	L	V	I	T	D	E	Q	H	R	F	G	V	N	Q	R	.	.	.	.	.	Q	L	L	R	E	K	G	A
Query Conservation																																											.	.	.	.	.																						.	.	.	.	.
Alig confidence		.	.										.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.																						.	.	.	.	.
Template Conservation		.	.										.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	V	G	L	M	T	G	D	I	T	.	.	.	.	.	.	.	.	.	.	.	I	N	P	D	A	G	C	L	V	M	T	T	E	I	L	R	S	M	L	Y	R	G	S	E	V	M	R	E	V	A	W	V	I	F	D	E	V	H	Y	M	R	D	K	E	R	G	V	V	W	E	E	T	I	I	L	L	P	D
Template Known Secondary structure		.	.						S	S			.	.	.	.	.	.	.	.	.	.	.			T	T		S																T		T	T	G	G	G								T	G	G	G	G	G		T	T	T											S		T
Template Predicted Secondary structure		.	.										.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
				219	220	.	.	.	.	.	.	.												.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.
		411	.	.	.	.	.	.	.	.	420		.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.																														.	.	.	.	.	460
Predicted Secondary structure												.																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence												.																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		M	T	N	V	L	F	M	T	A	T	.	P	I	P	R	T	L	A	I	S	V	F	G	E	M	D	V	S	S	I	K	Q	L	P	K	G	R	K	P	I	I	T	T	W	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	H	E	Q	Y	D
Query Conservation												.																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence												.																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		K	V	R	Y	V	F	L	S	A	T	I	P	N	A	M	E	F	A	E	W	I	C	K	I	H	S	Q	P	C	H	I	V	Y	T	N	F	R	P	T	P	L	Q	H	Y	L	F	P	A	H	G	D	G	I	Y	L	V	V	D	E	K	S	T	F	R	E	E	N	F	Q	K	A	M	A	S	I	S	G	D	I	Y
Template Known Secondary structure		T											T	T													T	S											S	S									T	T	S	S								T	T			B											T
Template Predicted Secondary structure
Template SS confidence
		286	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.
		461	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.																																		.	.	.	.	.	.	500	.	.	.	.	.	.	.
Predicted Secondary structure																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		K	V	L	M	Q	M	T	S	E	L	K	K	G	R	Q	A	Y	V	I	C	P	L	I	E	S	S	E	H	L	E	D	V	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	V	V	A	L	Y	E	S	L	Q	Q	Y	Y	G
Query Conservation																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence										.	.																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.
Template Conservation										.	.																																																																				.	.	.
Template Sequence		K	I	V	K	M	I	W	K	.	.	K	K	Y	N	P	V	I	V	F	S	F	S	K	R	D	C	E	E	L	A	L	K	M	S	K	L	D	F	N	S	D	D	E	K	E	A	L	T	K	I	F	N	N	A	I	A	L	L	P	E	T	D	R	E	L	P	Q	I	K	H	I	L	P	L	L	R	R	.	.	.
Template Known Secondary structure										.	.		T			S						S	S										T	T	T	T	S																				T	T	S		G	G	G	T	T														.	.	.
Template Predicted Secondary structure										.	.																																																																				.	.	.
Template SS confidence
		396	.	.	.	400	.	.	.			.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470
		508	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.									.	.	.	.	.	570	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																											.	.	.	.	.	.	.	.
Query SS confidence																																																											.	.	.	.	.	.	.	.
Query Sequence		V	S	R	V	G	L	L	H	G	K	L	S	A	D	E	K	D	E	V	M	Q	K	F	S	N	H	E	I	N	V	L	V	S	T	T	V	V	E	V	G	V	N	V	P	N	A	T	F	M	M	I	Y	D	A	D	R	F	.	.	.	.	.	.	.	.	G	L	S	T	L	H	Q	L	R	G	R	V	G	R	S
Query Conservation																																																											.	.	.	.	.	.	.	.
Alig confidence		.	.																																											.													.	.	.	.	.	.	.	.
Template Conservation		.	.																																											.
Template Sequence		.	.	G	I	G	I	H	H	S	G	L	L	P	I	L	K	E	V	I	E	I	L	F	Q	E	G	F	L	K	V	L	F	A	T	E	T	F	S	I	G	L	N	M	P	.	A	K	T	V	V	F	T	S	V	R	K	W	D	G	Q	Q	F	R	W	V	S	G	G	E	Y	I	Q	M	S	G	R	A	G	R	R
Template Known Secondary structure		.	.	T					S	T	T	S														T	T			S						G	G	G	G	G	S	T	T			.	B	S					S		S					S	S															T	T	B			T
Template Predicted Secondary structure		.	.																																											.
Template SS confidence
				471	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.		.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.
		580			.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.
Predicted Secondary structure			.	.
Query SS confidence			.	.
Query Sequence		D	.	.	Q	Q	S	Y	C	V	L	I	A	S	P	K	T	E	T	G	I
Query Conservation			.	.
Alig confidence			.	.
Template Conservation
Template Sequence		G	L	D	D	R	G	I	V	I	M	M	I	D	E	K	M	E	P	Q	V
Template Known Secondary structure		T	T		S	S									S
Template Predicted Secondary structure
Template SS confidence
		548	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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