Job Description O50581 Confidence 100.00% Date Tue Jul 17 17:05:03 BST 2012 Rank 27 Aligned Residues 325 % Identity 18% Template c2vbcA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:dengue 4 ns3 full-length protein; PDBTitle: crystal structure of the ns3 protease-helicase from dengue2 virus Resolution 3.15 Å

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		283	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.		.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.
Predicted Secondary structure																											.
Query SS confidence																											.
Query Sequence		P	I	R	M	H	R	L	L	Q	G	D	V	G	S	G	K	T	V	V	A	A	I	C	M	Y	.	A	L	K	T	A	G	Y	Q	S	A	L	M	V	P	T	E	I	L	A	E	Q	H	A	E	S	L	M	A	L	F	G	D	S	M	N	V	A	L	L	T	G	S	V	K	G	K	K	R	K	I	L	L	E	Q
Query Conservation																											.
Alig confidence																											.																														.																.	.	.	.	.	.	.	.	.
Template Conservation																																																									.																.	.	.	.	.	.	.	.	.
Template Sequence		R	K	K	R	L	T	I	M	D	L	H	P	G	A	G	K	T	K	R	I	L	P	S	I	V	R	E	A	L	K	R	R	L	R	T	L	I	L	A	P	T	R	V	V	A	A	E	M	E	E	A	L	R	G	L	.	P	I	R	Y	Q	T	P	A	V	K	S	D	H	T	G	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		S	T	T									T	T	T			T	T	T												T	T								S	S											T	T	T	S	.							T	T		S						.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																									.																.	.	.	.	.	.	.	.	.
Template SS confidence
		184	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.		.	240	.	.	.	.	.	.	.	.	.	250	.	.	.
		362	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.					.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.						.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.
Predicted Secondary structure																						.	.	.	.																									.	.	.	.	.
Query SS confidence																						.	.	.	.																									.	.	.	.	.
Query Sequence		L	E	N	G	T	I	D	C	L	I	G	T	H	A	L	I	Q	D	D	V	.	.	.	.	I	F	H	N	V	G	L	V	I	T	D	E	Q	H	R	F	G	V	N	Q	R	Q	L	L	.	.	.	.	.	R	E	K	G	A	M	T	N	V	L	F	M	T	A	T	P	I	P	R	T	L	A	I	S	V	F	G
Query Conservation																						.	.	.	.																									.	.	.	.	.
Alig confidence		.	.	.	.																	.	.	.	.																									.	.	.	.	.
Template Conservation		.	.	.	.
Template Sequence		.	.	.	.	R	E	I	V	D	L	M	C	H	A	T	F	T	T	R	L	L	S	S	T	R	V	P	N	Y	N	L	I	V	M	D	E	A	H	F	T	D	P	C	S	V	A	A	R	G	Y	I	S	T	R	V	E	M	G	E	A	A	A	I	F	M	T	A	T	P	P	G	S	T	D	P	F	P	Q	S	N
Template Known Secondary structure		.	.	.	.	S	S																		S						S						S	T	T			S																	T	S								S	S		T	T				S	S				S
Template Predicted Secondary structure		.	.	.	.
Template SS confidence
						254	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.
		433	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	M	D	V	S	S	I	K	Q	L	P	K	G	R	K	P	I	I	T	T	W	A	K	H	E	Q	Y	D	K	V	L	M	Q	M	T	S	E	L	K	K	G	R	Q	A	Y	V	I	C	P	L	I	E	S	S	E	H	L	E	D	V	Q	N	V	V	A	L	Y	E	S	L	Q	Q	Y	Y	G	V	S	R	V	G
Query Conservation
Alig confidence																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.	.												.	.
Template Conservation																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.	.												.	.
Template Sequence		S	P	I	E	D	I	E	R	E	I	P	E	R	S	W	N	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	F	D	W	I	T	D	Y	Q	G	K	T	V	W	F	V	P	S	I	K	.	.	.	.	.	.	.	.	.	A	G	N	D	I	A	N	C	L	R	K	.	.	S	G	K	R	V	I
Template Known Secondary structure		S											S	S				S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S									S							S	S			.	.	.	.	.	.	.	.	.											T	.	.	T	T
Template Predicted Secondary structure																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.	.												.	.
Template SS confidence
		330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.																.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.										.	.	.	370	.	.	.	.	.	.	.			.	.	380	.	.	.
		513	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.																			.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.
Predicted Secondary structure																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	L	H	G	K	L	S	A	D	E	K	D	E	V	M	Q	K	F	S	N	H	E	I	N	V	L	V	S	T	T	V	V	E	V	G	V	N	V	P	N	A	T	F	M	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	M	I	Y	D	A	D	R	F	G	L	S	T	L	H	Q	L	R	G
Query Conservation																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence								.	.	.	.																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation								.	.	.	.
Template Sequence		Q	L	S	R	K	T	.	.	.	.	F	D	T	E	Y	P	K	T	K	L	T	D	W	D	F	V	V	T	T	D	I	S	E	M	G	A	N	F	R	A	G	R	V	I	D	P	R	R	C	L	K	P	V	I	L	T	D	G	P	E	R	V	I	L	A	G	P	I	P	V	T	P	A	S	A	A	Q	R	R	G
Template Known Secondary structure					T	T	T	.	.	.	.					T						S			S						G	G	G	G	T	T						S																S	S	S
Template Predicted Secondary structure								.	.	.	.
Template SS confidence
		384	.	.	.	.	.					390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.
		575	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	V	G	R	S	D	Q	Q	S	Y	C	V	L	I	A	S	P	K	T	E	T	G	I	E	R	M	T	I	M	T	Q	T	T	D	G	F	E	L	S	E	R	D	L	E	M	R	G	P	G	D	F	F	G	V	K	Q	S	G	L	P	D	F	L	V	A	N	L	V	E	D	Y	R	M	L	E	V	A	R	D
Query Conservation
Alig confidence																																		.	.
Template Conservation																																		.	.
Template Sequence		R	I	G	R	N	P	A	Q	E	D	D	Q	Y	V	F	S	G	D	P	L	K	N	D	E	D	H	A	H	W	T	E	A	.	.	K	M	L	L	D	N	I	Y	T	P	E	G	I	I	P	T	L	F	G	P	E	R	E	K	T	Q	A	I	D	G	E	F	R	L	R	G	E	Q	R	K	T	F	V	E	L
Template Known Secondary structure		T	S	S		S			S	S								S							T	T	B							.	.					T	T	S			T	T								G	G	G	G	G	G			S		T	T	T	T				T	T
Template Predicted Secondary structure																																		.	.
Template SS confidence
		460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.			.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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