Job Description O50581 Confidence 100.00% Date Tue Jul 17 17:05:03 BST 2012 Rank 14 Aligned Residues 324 % Identity 22% Template c2p6uA_ PDB info PDB header:dna binding protein Chain: A: PDB Molecule:afuhel308 helicase; PDBTitle: apo structure of the hel308 superfamily 2 helicase Resolution 3.14 Å

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		252	.	.	.	.	.	.	.	260	.	.	.	.		.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330
Predicted Secondary structure															.
Query SS confidence															.
Query Sequence		D	Q	V	K	S	F	I	D	R	L	P	F	E	.	L	T	E	A	Q	K	S	S	V	N	E	I	F	R	D	L	K	A	P	I	R	M	H	R	L	L	Q	G	D	V	G	S	G	K	T	V	V	A	A	I	C	M	Y	A	L	K	T	A	G	Y	Q	S	A	L	M	V	P	T	E	I	L	A	E	Q	H	A
Query Conservation															.
Alig confidence															.															.	.	.	.	.	.
Template Conservation																														.	.	.	.	.	.
Template Sequence		E	E	L	A	E	S	I	S	S	Y	A	V	G	I	L	F	P	P	Q	A	E	A	V	E	K	V	F	S	.	.	.	.	.	.	G	K	N	L	L	L	A	M	P	T	A	A	G	K	T	L	L	A	E	M	A	M	V	R	E	A	I	K	G	G	K	S	L	Y	V	V	P	L	R	A	L	A	G	E	K	Y
Template Known Secondary structure													S						S	S	T							T	T	.	.	.	.	.	.		S							S	S																			T								S	S
Template Predicted Secondary structure																														.	.	.	.	.	.
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.							.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.
		331	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.						.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.
Predicted Secondary structure																																																					.	.	.	.	.																						.	.	.
Query SS confidence																																																					.	.	.	.	.																						.	.	.
Query Sequence		E	S	L	M	A	L	F	G	D	S	M	N	V	A	L	L	T	G	S	V	K	G	K	K	R	K	I	L	L	E	Q	L	E	N	G	T	I	D	C	L	I	G	T	H	A	L	I	Q	D	D	V	.	.	.	.	.	I	F	H	N	V	G	L	V	I	T	D	E	Q	H	R	F	G	V	N	Q	R	.	.	.
Query Conservation																																																					.	.	.	.	.																						.	.	.
Alig confidence																											.	.	.	.	.	.	.																				.	.	.	.	.																						.	.	.
Template Conservation																											.	.	.	.	.	.	.
Template Sequence		E	S	F	K	K	W	E	K	I	G	L	R	I	G	I	S	T	G	D	Y	E	S	R	D	E	.	.	.	.	.	.	.	H	L	G	D	C	D	I	I	V	T	T	S	E	K	A	D	S	L	I	R	N	R	A	S	W	I	K	A	V	S	C	L	V	V	D	E	I	H	L	L	D	S	E	K	R	G	A	T
Template Known Secondary structure					G	G	G	G	T	T	T								S			S				T	.	.	.	.	.	.	.	T	G	G	G		S															T	T		S	S	G	G	G							T	T	G	G	G	G	G		T	T	T
Template Predicted Secondary structure																											.	.	.	.	.	.	.
Template SS confidence
		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110								.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
							403	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420		.	.	.	.	.	.	.	.	.	430								.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.																			.											.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.																			.											.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	Q	L	L	R	E	K	G	A	M	T	N	V	L	F	M	T	A	T	.	P	I	P	R	T	L	A	I	S	V	.	.	.	.	.	.	.	F	G	E	M	D	V	S	S	I	K	Q	L	P	K	G	R	K	P	I	I	T	T	W	A	K	H	E	Q	Y	D	K	V	L	M	Q	M	T	S	E
Query Conservation		.	.	.	.	.																			.											.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.																			.											.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	E	I	L	V	T	K	M	R	R	M	N	K	A	L	R	V	I	G	L	S	A	T	A	P	N	V	T	E	I	A	E	W	L	D	A	D	Y	Y	V	S	D	W	R	P	V	P	L	V	E	G	V	L	C	E	G	T	L	E	L	F	D	G	A	F	S	T	S	R	R	V	K	F	E	E	L	V	E	E	C
Template Known Secondary structure														T	T											T	T									T										S	S									T	T							T	T						B
Template Predicted Secondary structure
Template SS confidence
		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
		470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.																									.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.
Predicted Secondary structure																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	K	K	G	R	Q	A	Y	V	I	C	P	L	I	E	S	S	E	H	L	E	D	V	Q	N	V	V	A	L	Y	E	S	L	Q	Q	Y	Y	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	S	R	V	G	L	L	H	G	K	L	S	A	D	E	K	D	E
Query Conservation																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																						.	.	.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																						.	.	.	.	.
Template Sequence		V	A	E	N	G	G	V	L	V	F	E	S	T	R	R	G	A	E	K	T	.	.	.	.	.	A	V	K	L	S	A	I	T	A	K	Y	V	E	N	E	G	L	E	K	A	I	L	E	E	N	E	G	E	M	S	R	K	L	A	E	C	V	R	K	G	A	A	F	H	H	A	G	L	L	N	G	Q	R	R	V
Template Known Secondary structure					T	S							S	S								.	.	.	.	.										T	T												T	T			S												T	S						T	T	S
Template Predicted Secondary structure																						.	.	.	.	.
Template SS confidence
		239	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.						.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.
		526	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.				.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580			.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.
Predicted Secondary structure																																									.	.	.																	.	.
Query SS confidence																																									.	.	.																	.	.
Query Sequence		V	M	Q	K	F	S	N	H	E	I	N	V	L	V	S	T	T	V	V	E	V	G	V	N	V	P	N	A	T	F	M	M	I	Y	D	A	D	R	F	.	.	.	G	L	S	T	L	H	Q	L	R	G	R	V	G	R	S	D	.	.	Q	Q	S	Y	C	V	L	I	A	S	P	K	T	E	T	G	I
Query Conservation																																									.	.	.																	.	.
Alig confidence																					.	.	.					.													.	.	.																	.	.
Template Conservation																					.	.	.					.
Template Sequence		V	E	D	A	F	R	R	G	N	I	K	V	V	V	A	T	P	T	L	.	.	.	V	N	L	P	.	A	R	R	V	I	V	R	S	L	Y	R	F	K	R	I	K	V	S	E	Y	K	Q	M	A	G	R	A	G	R	P	G	M	D	E	R	G	E	A	I	I	I	V	G	K	R	D	R	E	I	A
Template Known Secondary structure									T	S								T	T		.	.	.					.		S							S	S															T	T				T	T	T		S	S									S	S		T
Template Predicted Secondary structure																					.	.	.					.
Template SS confidence
		314	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.				.	.	.	.		.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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