Job Description O50581 Confidence 100.00% Date Tue Jul 17 17:05:03 BST 2012 Rank 40 Aligned Residues 341 % Identity 18% Template c2hxyC_ PDB info PDB header:hydrolase Chain: C: PDB Molecule:probable atp-dependent rna helicase ddx48; PDBTitle: crystal structure of human apo-eif4aiii Resolution 3.30 Å

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		242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.		.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.				.	.	.	.	.
Predicted Secondary structure																									.																																																	.	.	.
Query SS confidence																									.																																																	.	.	.
Query Sequence		D	E	A	I	E	I	D	Y	D	I	D	Q	V	K	S	F	I	D	R	L	P	F	E	.	L	T	E	A	Q	K	S	S	V	N	E	I	F	R	D	L	K	A	P	I	R	M	H	R	L	L	Q	G	D	V	G	S	G	K	T	V	V	A	A	I	C	M	Y	A	L	K	T	A	.	.	.	G	Y	Q	S	A
Query Conservation																									.																																																	.	.	.
Alig confidence																				.					.															.	.	.	.	.	.																													.	.	.
Template Conservation																				.																				.	.	.	.	.	.
Template Sequence		P	T	F	D	T	M	G	L	R	E	D	L	L	R	G	I	Y	A	.	Y	G	F	E	K	P	S	A	I	Q	Q	R	A	I	K	Q	I	I	K	.	.	.	.	.	.	G	R	D	V	I	A	Q	S	Q	S	G	T	G	K	T	A	T	F	S	I	S	V	L	Q	C	L	D	I	Q	V	R	E	T	Q	A	L
Template Known Secondary structure				S	G	G	G	T												.		T			S															.	.	.	.	.	.	T									S	S	S		T	T										S			T	T	S		S
Template Predicted Secondary structure																				.																				.	.	.	.	.	.
Template SS confidence
		38	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.		.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.							.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110
		318	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.		340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.						.	.	.	.	.	.	.	.	390	.
Predicted Secondary structure																								.																																											.	.	.	.	.
Query SS confidence																								.																																											.	.	.	.	.
Query Sequence		L	M	V	P	T	E	I	L	A	E	Q	H	A	E	S	L	M	A	L	F	G	D	.	S	M	N	V	A	L	L	T	G	S	V	K	G	K	K	R	K	I	L	L	E	Q	L	E	N	G	T	I	D	C	L	I	G	T	H	A	L	I	Q	D	D	V	.	.	.	.	.	I	F	H	N	V	G	L	V	I	T
Query Conservation																								.																																											.	.	.	.	.
Alig confidence																								.																							.	.	.	.																	.	.	.	.	.
Template Conservation																																															.	.	.	.
Template Sequence		I	L	A	P	T	R	E	L	A	V	Q	I	Q	K	G	L	L	A	L	G	D	Y	M	N	V	Q	C	H	A	C	I	G	G	T	N	V	G	E	D	I	R	K	L	D	Y	.	.	.	.	G	Q	H	V	V	A	G	T	P	G	R	V	F	D	M	I	R	R	R	S	L	R	T	R	A	I	K	M	L	V	L
Template Known Secondary structure					S																S	G	G	G										S	S	S											.	.	.	.			S															T	T		S			T	T
Template Predicted Secondary structure																																															.	.	.	.
Template SS confidence
		111	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.					.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.
		392	.	.	.	.						.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420			.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.
Predicted Secondary structure							.	.	.	.	.																									.	.
Query SS confidence							.	.	.	.	.																									.	.
Query Sequence		D	E	Q	H	R	.	.	.	.	.	F	G	V	N	Q	R	Q	L	L	R	E	K	G	A	M	T	N	V	L	F	M	T	A	T	.	.	P	I	P	R	T	L	A	I	S	V	F	G	E	M	D	V	S	S	I	K	Q	L	P	K	G	R	K	P	I	I	T	T	W	A	K	H	E	Q	Y	D	K	V	L	M
Query Conservation							.	.	.	.	.																									.	.
Alig confidence							.	.	.	.	.																									.	.
Template Conservation
Template Sequence		D	E	A	D	E	M	L	N	K	G	F	K	E	Q	I	Y	D	V	Y	R	Y	L	P	P	A	T	Q	V	V	L	I	S	A	T	L	P	H	E	I	L	E	M	T	N	K	F	M	T	D	P	I	R	I	L	V	K	R	D	E	L	T	L	E	G	I	K	Q	F	F	V	A	V	E	R	E	E	W	K	F	D
Template Known Secondary structure		T	T							T	T										T	T	S		S	S								S				T	T						T	T	S		S	S						S	S					B		T	T										S	T
Template Predicted Secondary structure
Template SS confidence
		187	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.
		465	.	.	.	.	470	.	.			.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.
Predicted Secondary structure										.	.
Query SS confidence										.	.
Query Sequence		Q	M	T	S	E	L	K	K	.	.	G	R	Q	A	Y	V	I	C	P	L	I	E	S	S	E	H	L	E	D	V	Q	N	V	V	A	L	Y	E	S	L	Q	Q	Y	Y	G	V	S	R	V	G	L	L	H	G	K	L	S	A	D	E	K	D	E	V	M	Q	K	F	S	N	H	E	I	N	V	L	V	S	T	T
Query Conservation										.	.
Alig confidence										.	.													.	.	.	.	.	.	.	.	.												.	.
Template Conservation																								.	.	.	.	.	.	.	.	.												.	.
Template Sequence		T	L	C	D	L	Y	D	T	L	T	I	T	Q	A	V	I	F	C	N	T	K	R	.	.	.	.	.	.	.	.	.	K	V	D	W	L	T	E	K	M	R	E	.	.	A	N	F	T	V	S	S	M	H	G	D	M	P	Q	K	E	R	E	S	I	M	K	E	F	R	S	G	A	S	R	V	L	I	S	T	D
Template Known Secondary structure							T					T	S							S				.	.	.	.	.	.	.	.	.											T	.	.	T									T	T	S															T	S		S						S
Template Predicted Secondary structure																								.	.	.	.	.	.	.	.	.												.	.
Template SS confidence
		267	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.										.	290	.	.	.	.	.	.	.	.	.			300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.
		543	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	V	E	V	G	V	N	V	P	N	A	T	F	M	M	I	Y	D	A	D	R	F	G	L	S	T	L	H	Q	L	R	G	R	V	G	R	S	D	Q	Q	S	Y	C	V	L	I	A	S	P	K	T	E	T	G	I	E	R	M	T	I	M	T	Q
Query Conservation
Alig confidence																							.
Template Conservation																							.
Template Sequence		V	W	A	R	G	L	D	V	P	Q	V	S	L	I	I	N	Y	D	L	P	N	.	N	R	E	L	Y	I	H	R	I	G	R	S	G	R	Y	G	R	K	G	V	A	I	N	F	V	K	N	D	D	I	R	I	L	R	D	I	E	Q	Y	Y	S
Template Known Secondary structure				S	S	S	S		S				S					S	S			S	.	S	T	T	T							B		S	S	S												G	G	G												T
Template Predicted Secondary structure																							.
Template SS confidence
		336	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.		.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions