Job Description O50581 Confidence 99.97% Date Tue Jul 17 17:05:03 BST 2012 Rank 57 Aligned Residues 258 % Identity 16% Template c2f55C_ PDB info PDB header:hydrolase/dna Chain: C: PDB Molecule:polyprotein; PDBTitle: two hepatitis c virus ns3 helicase domains complexed with2 the same strand of dna Resolution 3.30 Å

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		283	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	I	R	M	H	R	L	L	Q	G	D	V	G	S	G	K	T	V	V	A	A	I	C	M	Y	A	L	K	T	A	G	Y	Q	S	A	L	M	V	P	T	E	I	L	A	E	Q	H	A	E	S	L	M	A	L	F	G	D	S	M	N	V	A	L	L	T	G	S	V	K	G	K	K	R	K	I	L	L	E	Q	L
Query Conservation
Alig confidence																											.	.	.																												.	.											.	.	.	.	.	.	.	.	.	.	.
Template Conservation																											.	.	.																												.	.											.	.	.	.	.	.	.	.	.	.	.
Template Sequence		Q	T	F	Q	V	A	H	L	H	A	P	T	G	S	G	K	S	T	K	V	P	A	A	Y	A	.	.	.	A	Q	G	Y	K	V	L	V	L	N	P	S	V	A	A	T	L	G	F	G	A	Y	M	S	K	A	H	.	.	G	I	D	P	N	I	R	T	G	V	.	.	.	.	.	.	.	.	.	.	.	R	T
Template Known Secondary structure		S	S		B								S	S	S	S	T	T	T	T	S						.	.	.	T	T	S								S		S														S	.	.	S								S	S	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																											.	.	.																												.	.											.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		195	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.				220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.			.	.	.	250	.	.	.	.	.	.												.	.
		363	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.			.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.							.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.
Predicted Secondary structure																						.	.																										.	.	.	.	.	.
Query SS confidence																						.	.																										.	.	.	.	.	.
Query Sequence		E	N	G	T	I	D	C	L	I	G	T	H	A	L	I	Q	D	D	V	I	.	.	F	H	N	V	G	L	V	I	T	D	E	Q	H	R	F	G	V	N	Q	R	Q	L	L	R	E	.	.	.	.	.	.	K	G	A	M	T	N	V	L	F	M	T	A	T	P	I	P	R	T	L	A	I	S	V	F	G	E	M
Query Conservation																						.	.																										.	.	.	.	.	.
Alig confidence																						.	.																										.	.	.	.	.	.																.	.	.	.	.	.	.	.
Template Conservation																																																																						.	.	.	.	.	.	.	.
Template Sequence		I	T	T	G	G	S	I	T	Y	S	T	Y	G	K	F	L	A	D	G	G	C	S	G	G	A	Y	D	I	I	I	C	D	E	C	H	S	T	D	S	T	T	I	L	G	I	G	T	V	L	D	Q	A	E	T	A	G	A	R	L	V	V	L	A	T	A	T	P	P	.	.	.	.	.	.	.	.	G	S	V	T
Template Known Secondary structure							S												T	T	S	S	S	T	T			S					T	T	T	T			S											T	T	S	S	T	T	T	T									S	S		T	.	.	.	.	.	.	.	.	T
Template Predicted Secondary structure																																																																						.	.	.	.	.	.	.	.
Template SS confidence
		259	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.									.	.	.	330
		435	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	V	S	S	I	K	Q	L	P	K	G	R	K	P	I	I	T	T	W	A	K	H	E	Q	Y	D	K	V	L	M	Q	M	T	S	E	L	K	K	G	R	Q	A	Y	V	I	C	P	L	I	E	S	S	E	H	L	E	D	V	Q	N	V	V	A	L	Y	E	S	L	Q	Q	Y	Y	G	V	S	R	V	G	L	L
Query Conservation
Alig confidence																															.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.												.	.
Template Conservation																															.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.												.	.
Template Sequence		V	P	H	P	N	I	E	E	I	G	L	S	N	N	G	E	I	P	F	Y	G	K	A	I	P	I	E	A	I	.	.	.	.	.	.	.	.	K	G	G	R	H	L	I	F	C	H	S	K	K	.	.	.	.	.	.	.	.	.	K	C	D	E	L	A	A	K	L	T	G	.	.	L	G	L	N	A	V	A	Y
Template Known Secondary structure					T	T		B						S		S	S				T	T									.	.	.	.	.	.	.	.	T	T	S	B						S	S			.	.	.	.	.	.	.	.	.												.	.	T	T						B
Template Predicted Secondary structure																															.	.	.	.	.	.	.	.														.	.	.	.	.	.	.	.	.												.	.
Template SS confidence
		331	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.									360	.	.	.	.	.	.	.	.	.	370	.	.										.	.	.	.	.	.	.	380	.	.	.			.	.	.	.	.	.	390	.
		515	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.																		.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.
Predicted Secondary structure																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		H	G	K	L	S	A	D	E	K	D	E	V	M	Q	K	F	S	N	H	E	I	N	V	L	V	S	T	T	V	V	E	V	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	N	V	P	N	A	T	F	M	M	I	Y	D	A	D	R	F	G	L	S	T	L	H	Q	L	R	G	R	V	G
Query Conservation																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence											.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.
Template Conservation											.	.	.	.	.	.	.																																																			.
Template Sequence		Y	R	G	L	D	V	S	V	I	.	.	.	.	.	.	.	P	P	I	G	D	V	V	V	V	A	T	D	A	L	F	T	G	D	F	D	S	V	I	D	C	N	T	C	V	T	Q	T	V	D	F	S	L	D	P	T	F	T	I	E	T	T	T	V	P	Q	.	D	A	V	S	R	S	Q	R	R	G	R	T	G
Template Known Secondary structure			S	S	S		T	T		S	.	.	.	.	.	.	.		S	S	S	S	B						S								S														B				S	S	S		B									.	B								T	T	T	S
Template Predicted Secondary structure											.	.	.	.	.	.	.																																																			.
Template SS confidence
		392	.	.	.	.	.	.	.	400								.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450		.	.	.	.	.	.	.	.	.	460	.	.	.
		578	.	580	.	.	.	.	.	.	.	.	.	590	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	S	D	Q	Q	S	Y	C	V	L	I	A	S	P	K
Query Conservation
Alig confidence			.
Template Conservation			.
Template Sequence		R	.	G	R	S	G	I	Y	R	F	V	T	P	G	E
Template Known Secondary structure		S	.	S	S							S		S	S
Template Predicted Secondary structure			.
Template SS confidence
		467		.	.	470	.	.	.	.	.	.	.	.	.	480

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions