Job Description O50581 Confidence 100.00% Date Tue Jul 17 17:05:03 BST 2012 Rank 16 Aligned Residues 326 % Identity 17% Template c2db3D_ PDB info PDB header:hydrolase/rna Chain: D: PDB Molecule:atp-dependent rna helicase vasa; PDBTitle: structural basis for rna unwinding by the dead-box protein2 drosophila vasa Resolution 2.20 Å

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		252	.	.	.	.	.	.	.	260	.	.	.	.		.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310									.	.	.	.	.	.	.	.	.	320	.	.
Predicted Secondary structure															.																																															.	.	.	.	.	.	.	.
Query SS confidence															.																																															.	.	.	.	.	.	.	.
Query Sequence		D	Q	V	K	S	F	I	D	R	L	P	F	E	.	L	T	E	A	Q	K	S	S	V	N	E	I	F	R	D	L	K	A	P	I	R	M	H	R	L	L	Q	G	D	V	G	S	G	K	T	V	V	A	A	I	C	M	Y	A	L	K	.	.	.	.	.	.	.	.	T	A	G	Y	Q	S	A	L	M	V	P	T
Query Conservation															.																																															.	.	.	.	.	.	.	.
Alig confidence															.															.	.	.	.	.	.																											.	.	.	.	.	.	.	.
Template Conservation																														.	.	.	.	.	.
Template Sequence		D	I	I	I	D	N	V	N	K	S	G	Y	K	I	P	T	P	I	Q	K	C	S	I	P	V	I	S	S	.	.	.	.	.	.	G	R	D	L	M	A	C	A	Q	T	G	S	G	K	T	A	A	F	L	L	P	I	L	S	K	L	L	E	D	P	H	E	L	E	L	G	R	P	Q	V	V	I	V	S	P	T
Template Known Secondary structure											T	T			S														T	.	.	.	.	.	.	T									T	T	S																	S					B	T	T	B		S						S	S
Template Predicted Secondary structure																														.	.	.	.	.	.
Template SS confidence
		254	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.							.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.
		323	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.		340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.						.	.	.	.	.	.	.	.	390	.	.	.	.	.	.
Predicted Secondary structure																			.																																											.	.	.	.	.
Query SS confidence																			.																																											.	.	.	.	.
Query Sequence		E	I	L	A	E	Q	H	A	E	S	L	M	A	L	F	G	D	.	S	M	N	V	A	L	L	T	G	S	V	K	G	K	K	R	K	I	L	L	E	Q	L	E	N	G	T	I	D	C	L	I	G	T	H	A	L	I	Q	D	D	V	.	.	.	.	.	I	F	H	N	V	G	L	V	I	T	D	E	Q	H	R
Query Conservation																			.																																											.	.	.	.	.
Alig confidence																			.																							.	.	.	.																	.	.	.	.	.
Template Conservation																																										.	.	.	.
Template Sequence		R	E	L	A	I	Q	I	F	N	E	A	R	K	F	A	F	E	S	Y	L	K	I	G	I	V	Y	G	G	T	S	F	R	H	Q	N	E	C	I	T	R	.	.	.	.	G	C	H	V	V	I	A	T	P	G	R	L	L	D	F	V	D	R	T	F	I	T	F	E	D	T	R	F	V	V	L	D	E	A	D	R
Template Known Secondary structure																T	T	T	S	S								S	S	S											T	.	.	.	.			S																T	S	S			T	T								T
Template Predicted Secondary structure																																										.	.	.	.
Template SS confidence
		328	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.					.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.
		397	.	.	400	.	.	.	.	.	.	.								.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.			.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.
Predicted Secondary structure													.	.	.	.	.	.	.																																										.	.
Query SS confidence													.	.	.	.	.	.	.																																										.	.
Query Sequence		F	G	V	N	Q	R	Q	L	L	R	E	.	.	.	.	.	.	.	K	G	A	M	T	N	V	L	F	M	T	A	T	P	I	P	R	T	L	A	I	S	V	F	G	E	M	D	V	S	S	I	K	Q	L	P	K	G	R	K	P	.	.	I	I	T	T	W	A	K	H	E	Q	Y	D	K	V	L	M	Q	M	T
Query Conservation													.	.	.	.	.	.	.																																										.	.
Alig confidence													.	.	.	.	.	.	.																																										.	.
Template Conservation
Template Sequence		M	L	D	M	G	F	S	E	D	M	R	R	I	M	T	H	V	T	M	R	P	E	H	Q	T	L	M	F	S	A	T	F	P	E	E	I	Q	R	M	A	G	E	F	L	K	N	Y	V	F	V	A	I	G	I	V	G	G	A	C	S	D	V	K	Q	T	I	Y	E	V	N	K	Y	A	K	R	S	K	L	I	E
Template Known Secondary structure			T	S												T		T	T	S		S	S								S											G	G	G		S	S							S	S	T	T				T	T										G	G	G
Template Predicted Secondary structure
Template SS confidence
		404	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.
		468	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	E	L	K	K	G	R	Q	A	Y	V	I	C	P	L	I	E	S	S	E	H	L	E	D	V	Q	N	V	V	A	L	Y	E	S	L	Q	Q	Y	Y	G	V	S	R	V	G	L	L	H	G	K	L	S	A	D	E	K	D	E	V	M	Q	K	F	S	N	H	E	I	N	V	L	V	S	T	T	V	V	E	V	G
Query Conservation
Alig confidence																			.	.	.	.	.	.	.	.	.												.	.
Template Conservation																			.	.	.	.	.	.	.	.	.												.	.
Template Sequence		I	L	S	E	Q	A	D	G	T	I	V	F	V	E	T	K	R	.	.	.	.	.	.	.	.	.	G	A	D	F	L	A	S	F	L	S	E	.	.	K	E	F	P	T	T	S	I	H	G	D	R	L	Q	S	Q	R	E	Q	A	L	R	D	F	K	N	G	S	M	K	V	L	I	A	T	S	V	A	S	R	G
Template Known Secondary structure								T	T						S				.	.	.	.	.	.	.	.	.											T	.	.	T	T								T	T	S														T	T	S								G	G	G	S	S	S
Template Predicted Secondary structure																			.	.	.	.	.	.	.	.	.												.	.
Template SS confidence
		484	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500										.	.	.	.	.	.	.	.	.	510	.			.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.
		548	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	N	V	P	N	A	T	F	M	M	I	Y	D	A	D	R	F	G	L	S	T	L	H	Q	L	R	G	R	V	G	R	S	D	Q	Q	S	Y	C	V	L	I	A	S	P	K	T	E	T	G	I	E	R
Query Conservation
Alig confidence																		.
Template Conservation																		.
Template Sequence		L	D	I	K	N	I	K	H	V	I	N	Y	D	M	P	S	.	K	I	D	D	Y	V	H	R	I	G	R	T	G	R	V	G	N	N	G	R	A	T	S	F	F	D	P	E	K	D	R	A	I	A	A
Template Known Secondary structure					T	T							S	S			S	.	S									T	T	S	S		T	T											T	T	T
Template Predicted Secondary structure																		.
Template SS confidence
		553	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.		.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions