Job Description O50581 Confidence 100.00% Date Tue Jul 17 17:05:03 BST 2012 Rank 31 Aligned Residues 272 % Identity 18% Template c1ymfA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:genome polyprotein [contains: flavivirin PDBTitle: crystal structure of yellow fever virus ns3 helicase2 complexed with adp Resolution 2.60 Å

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		283	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.		.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.
Predicted Secondary structure																											.
Query SS confidence																											.
Query Sequence		P	I	R	M	H	R	L	L	Q	G	D	V	G	S	G	K	T	V	V	A	A	I	C	M	Y	.	A	L	K	T	A	G	Y	Q	S	A	L	M	V	P	T	E	I	L	A	E	Q	H	A	E	S	L	M	A	L	F	G	D	S	M	N	V	A	L	L	T	G	S	V	K	G	K	K	R	K	I	L	L	E	Q
Query Conservation																											.
Alig confidence																											.																																.														.	.	.	.	.	.	.	.	.
Template Conservation																																																											.														.	.	.	.	.	.	.	.	.
Template Sequence		K	K	G	X	T	T	V	L	D	F	H	P	G	A	G	K	T	R	R	F	L	P	Q	I	L	A	E	C	A	R	R	R	L	R	T	L	V	L	A	P	T	R	V	V	L	S	E	X	K	E	A	F	H	G	L	D	V	.	K	F	H	T	Q	A	F	S	A	H	G	S	G	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		S	T	T									T	T	S		T	T	T	T													T								S	S												T	T	S			.				S	S								S	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																											.														.	.	.	.	.	.	.	.	.
Template SS confidence
		189	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.		.	.	.	.	250	.	.	.	.	.	.	.	.
		362	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.					.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.						.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.
Predicted Secondary structure																						.	.	.	.																									.	.	.	.	.
Query SS confidence																						.	.	.	.																									.	.	.	.	.
Query Sequence		L	E	N	G	T	I	D	C	L	I	G	T	H	A	L	I	Q	D	D	V	.	.	.	.	I	F	H	N	V	G	L	V	I	T	D	E	Q	H	R	F	G	V	N	Q	R	Q	L	L	.	.	.	.	.	R	E	K	G	A	M	T	N	V	L	F	M	T	A	T	P	I	P	R	T	L	A	I	S	V	F	G
Query Conservation																						.	.	.	.																									.	.	.	.	.
Alig confidence		.	.	.	.																	.	.	.	.																									.	.	.	.	.
Template Conservation		.	.	.	.
Template Sequence		.	.	.	.	R	E	V	I	D	A	X	C	H	A	T	L	T	Y	R	X	L	E	P	T	R	V	V	N	W	E	V	I	I	X	D	E	A	H	F	L	D	P	A	S	I	A	A	R	G	W	A	A	H	R	A	R	A	N	E	S	A	T	I	L	X	T	A	T	P	P	G	T	S	D	E	F	P	H	S	N
Template Known Secondary structure		.	.	.	.	S																	S	S							S					T	T	T	T			S																T	T	S								S	S		T	T				S	S				S
Template Predicted Secondary structure		.	.	.	.
Template SS confidence
						259	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.
		433	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	M	D	V	S	S	I	K	Q	L	P	K	G	R	K	P	I	I	T	T	W	A	K	H	E	Q	Y	D	K	V	L	M	Q	M	T	S	E	L	K	K	G	R	Q	A	Y	V	I	C	P	L	I	E	S	S	E	H	L	E	D	V	Q	N	V	V	A	L	Y	E	S	L	Q	Q	Y	Y	G	V	S	R	V	G
Query Conservation
Alig confidence																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.												.	.
Template Conservation																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.												.	.
Template Sequence		G	E	I	E	D	V	Q	T	D	I	P	S	E	P	W	N	T	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	H	D	W	I	L	A	D	K	R	P	T	A	W	F	L	P	S	I	R	.	.	.	.	.	.	.	.	.	A	A	N	V	X	A	A	S	L	R	K	.	.	A	G	K	S	V	V
Template Known Secondary structure		S											S	S			S	S	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		T							S							S				.	.	.	.	.	.	.	.	.												.	.	T	T
Template Predicted Secondary structure																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.												.	.
Template SS confidence
		335	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.																.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.										.	.	.	.	.	.	.	.	380	.	.			.	.	.	.	.	.
		513	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.						.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.
Predicted Secondary structure																																						.	.	.	.	.
Query SS confidence																																						.	.	.	.	.
Query Sequence		L	L	H	G	K	L	S	A	D	E	K	D	E	V	M	Q	K	F	S	N	H	E	I	N	V	L	V	S	T	T	V	V	E	V	G	V	.	.	.	.	.	N	V	P	N	A	T	F	M	M	I	Y	D	A	D	R	F	G	L	S	T	L	H	Q	L	R	G	R	V	G	R	S	D	Q	Q	S	Y	C	V	L
Query Conservation																																						.	.	.	.	.
Alig confidence																																						.	.	.	.	.
Template Conservation
Template Sequence		V	L	N	R	K	T	F	E	K	K	P	D	F	I	L	A	T	D	I	A	E	X	G	A	N	L	C	V	E	R	V	L	D	C	R	T	A	F	K	P	V	L	V	D	E	G	R	K	V	A	I	K	G	P	L	R	I	S	A	S	S	A	A	Q	R	R	G	R	I	G	R	N	P	N	R	D	G	D	S	Y
Template Known Secondary structure					S	S	S						S					S	S	G	G	G			T	T				S															T	T	T	T																				T	T	S	S			T	T
Template Predicted Secondary structure
Template SS confidence
		389	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.
		588	.	590	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	A	S	P	K	T	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Y	Y	S	E	P	T	S
Template Known Secondary structure					S
Template Predicted Secondary structure
Template SS confidence
		477	.	.	480	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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