Job Description O50581 Confidence 95.94% Date Tue Jul 17 17:05:03 BST 2012 Rank 261 Aligned Residues 126 % Identity 14% Template c1xjvA_ PDB info PDB header:transcription/dna Chain: A: PDB Molecule:protection of telomeres 1; PDBTitle: crystal structure of human pot1 bound to telomeric single-2 stranded dna (ttagggttag) Resolution 1.73 Å

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		49	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.		.	.	.	.	.	100	.	.	.			.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120		.	.	.	.
Predicted Secondary structure																																																.										.	.																		.
Query SS confidence																																																.										.	.																		.
Query Sequence		N	T	V	I	D	L	N	Q	A	E	D	Q	S	N	V	T	I	E	G	Q	V	Y	T	A	P	V	V	A	F	F	G	R	N	K	S	K	L	T	V	H	L	M	V	N	N	I	.	A	V	K	C	I	F	F	N	Q	.	.	P	Y	L	K	K	K	I	E	L	N	Q	T	I	T	V	K	G	.	K	W	N	R
Query Conservation																																																.										.	.																		.
Alig confidence																																																.										.	.																		.
Template Conservation
Template Sequence		Y	I	Y	T	P	L	N	Q	L	K	G	G	T	I	V	N	V	Y	G	V	V	K	F	F	K	P	P	Y	L	S	K	G	T	D	Y	C	S	V	V	T	I	V	D	Q	T	N	V	K	L	T	C	L	L	F	S	G	N	Y	E	A	L	P	I	I	Y	K	N	G	D	I	V	R	F	H	R	L	K	I	Q	V
Template Known Secondary structure							G	G	G			S	S																			S	S	S	S										T	T											S	S	G	G	G	S					S	T	T
Template Predicted Secondary structure
Template SS confidence
		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.
		125	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	K	Q	E	I	T	G	N	R	V	F	F	N	S	Q	G	T	Q	T	Q	E	N	A	D	V	Q	L	E	P	V	Y	R	I	K	E	G	I	K	Q	K	Q	I	R	D	Q	I	R	Q	A	L	N	D
Query Conservation
Alig confidence																			.												.
Template Conservation																			.												.
Template Sequence		Y	K	K	E	T	Q	G	I	T	S	S	G	F	A	S	L	T	.	F	E	G	T	L	G	A	P	I	I	P	.	R	T	S	S	K	Y	F	N	F	T	T	E	D	H	K	M	V	E	A	L	R	V
Template Known Secondary structure			T	T															.				S	T	T						.	B		S		S	S
Template Predicted Secondary structure																			.												.
Template SS confidence
		89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.		.	.	.	.	110	.	.	.	.	.	.		.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions