Phyre 2 alignment of O50581 with c1s2mA

Job Description O50581
Confidence 100.00% Date Tue Jul 17 17:05:03 BST 2012

Rank 28 Aligned Residues 332

% Identity 18% Template c1s2mA_

PDB info PDB header:rna binding protein Chain: A: PDB Molecule:putative atp-dependent rna helicase dhh1; PDBTitle: crystal structure of the dead box protein dhh1p

Resolution 2.10 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	252	.	.	.	.	.	.	.	260	.	.	.		.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.				.	.	.	.	.	.	.	320	.	.	.	.	.	.	.
Predicted Secondary structure													.																																																		.	.	.
Query SS confidence													.																																																		.	.	.
Query Sequence	D	Q	V	K	S	F	I	D	R	L	P	F	.	E	L	T	E	A	Q	K	S	S	V	N	E	I	F	R	D	L	K	A	P	I	R	M	H	R	L	L	Q	G	D	V	G	S	G	K	T	V	V	A	A	I	C	M	Y	A	L	K	T	A	.	.	.	G	Y	Q	S	A	L	M	V	P	T	E	I	L	A	E
Query Conservation													.																																																		.	.	.
Alig confidence													.																.	.	.	.	.	.																													.	.	.
Template Conservation																													.	.	.	.	.	.
Template Sequence	R	E	L	L	M	G	I	F	E	A	G	F	E	K	P	S	P	I	Q	E	E	A	I	P	V	A	I	T	.	.	.	.	.	.	G	R	D	I	L	A	R	A	K	N	G	T	G	K	T	A	A	F	V	I	P	T	L	E	K	V	K	P	K	L	N	K	I	Q	A	L	I	M	V	P	T	R	E	L	A	L
Template Known Secondary structure										T	T			S															.	.	.	.	.	.	T									T	T	S																T	T	S		S								S	S
Template Predicted Secondary structure																													.	.	.	.	.	.
Template SS confidence
	55	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.							.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.

	328	.	330	.	.	.	.	.	.	.	.	.		340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.						.	.	.	.	.	.	.	.	390	.	.	.	.	.	.
Predicted Secondary structure													.																																											.	.	.	.	.																.	.	.	.	.
Query SS confidence													.																																											.	.	.	.	.																.	.	.	.	.
Query Sequence	Q	H	A	E	S	L	M	A	L	F	G	D	.	S	M	N	V	A	L	L	T	G	S	V	K	G	K	K	R	K	I	L	L	E	Q	L	E	N	G	T	I	D	C	L	I	G	T	H	A	L	I	Q	D	D	V	.	.	.	.	.	I	F	H	N	V	G	L	V	I	T	D	E	Q	H	R	.	.	.	.	.
Query Conservation													.																																											.	.	.	.	.																.	.	.	.	.
Alig confidence													.																							.	.	.	.																	.	.	.	.	.																.	.	.	.	.
Template Conservation																																				.	.	.	.
Template Sequence	Q	T	S	Q	V	V	R	T	L	G	K	H	C	G	I	S	C	M	V	T	T	G	G	T	N	L	R	D	D	I	L	R	L	N	E	.	.	.	.	T	V	H	I	L	V	G	T	P	G	R	V	L	D	L	A	S	R	K	V	A	D	L	S	D	C	S	L	F	I	M	D	E	A	D	K	M	L	S	R	D
Template Known Secondary structure										T	T	T	T	T								S	S	S									T	T	S	.	.	.	.			S															T	T		S			T	T								S					S	S
Template Predicted Secondary structure																																				.	.	.	.
Template SS confidence
	129	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.					.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.

	397	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.			.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.
Predicted Secondary structure																												.	.
Query SS confidence																												.	.
Query Sequence	F	G	V	N	Q	R	Q	L	L	R	E	K	G	A	M	T	N	V	L	F	M	T	A	T	P	I	P	.	.	R	T	L	A	I	S	V	F	G	E	M	D	V	S	S	I	K	Q	L	P	K	G	R	K	P	I	I	T	T	W	A	K	H	E	Q	Y	D	K	V	L	M	Q	M	T	S	E	L	K	K	G	R
Query Conservation																												.	.
Alig confidence																												.	.
Template Conservation
Template Sequence	F	K	T	I	I	E	Q	I	L	S	F	L	P	P	T	H	Q	S	L	L	F	S	A	T	F	P	L	T	V	K	E	F	M	V	K	H	L	H	K	P	Y	E	I	N	L	M	E	E	L	T	L	K	G	I	T	Q	Y	Y	A	F	V	E	E	R	Q	K	L	H	C	L	N	T	L	F	S	K	L	Q	I	N
Template Known Secondary structure										T	T	S		S	S								S															S	S					S			S	S		B		T	T										G	G	G												S			S
Template Predicted Secondary structure
Template SS confidence
	205	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.

	475	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	Q	A	Y	V	I	C	P	L	I	E	S	S	E	H	L	E	D	V	Q	N	V	V	A	L	Y	E	S	L	Q	Q	Y	Y	G	V	S	R	V	G	L	L	H	G	K	L	S	A	D	E	K	D	E	V	M	Q	K	F	S	N	H	E	I	N	V	L	V	S	T	T	V	V	E	V	G	V	N	V	P	N	A	T
Query Conservation
Alig confidence																							.	.	.	.	.	.	.	.	.	.	.
Template Conservation																							.	.	.	.	.	.	.	.	.	.	.
Template Sequence	Q	A	I	I	F	C	N	S	T	N	R	V	E	L	L	A	K	K	I	T	D	L	.	.	.	.	.	.	.	.	.	.	.	G	Y	S	C	Y	Y	S	H	A	R	M	K	Q	Q	E	R	N	K	V	F	H	E	F	R	Q	G	K	V	R	T	L	V	C	S	D	L	L	T	R	G	I	D	I	Q	A	V	N
Template Known Secondary structure							S	S															.	.	.	.	.	.	.	.	.	.	.	T								T	T	S														T	T	S	S	S					S	S		S	S	S	S				T	T
Template Predicted Secondary structure																							.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
	285	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.												.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.

	555	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	F	M	M	I	Y	D	A	D	R	F	G	L	S	T	L	H	Q	L	R	G	R	V	G	R	S	D	Q	Q	S	Y	C	V	L	I	A	S	P	K	T	E	T	G	I	E	R	M	T	I	M	T	Q
Query Conservation
Alig confidence										.
Template Conservation										.
Template Sequence	V	V	I	N	F	D	F	P	K	.	T	A	E	T	Y	L	H	R	I	G	R	S	G	R	F	G	H	L	G	L	A	I	N	L	I	N	W	N	D	R	F	N	L	Y	K	I	E	Q	E	L	G
Template Known Secondary structure					S	S			S	.	S										B	S	S		T	T											G	G	G												T
Template Predicted Secondary structure										.
Template SS confidence
	354	.	.	.	.	.	360	.	.		.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.

Download:

Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions