Job Description O50581 Confidence 100.00% Date Tue Jul 17 17:05:03 BST 2012 Rank 1 Aligned Residues 616 % Identity 39% Template c1gm5A_ PDB info PDB header:helicase Chain: A: PDB Molecule:recg; PDBTitle: structure of recg bound to three-way dna junction Resolution 3.24 Å

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		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50		.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
Predicted Secondary structure																																														.
Query SS confidence																																														.
Query Sequence		I	E	S	P	Y	S	L	L	Q	L	K	G	I	G	P	K	K	I	E	V	L	Q	Q	L	N	I	H	T	V	E	D	L	V	L	Y	L	P	T	R	Y	E	D	N	T	.	V	I	D	L	N	Q	A	E	D	Q	S	N	V	T	I	E	G	Q	V	Y	T	A	P	V	V	A	F	F	G	R	N	K	S	K	L
Query Conservation																																														.
Alig confidence						.	.																																							.																												.	.
Template Conservation						.	.																																																																			.	.
Template Sequence		L	S	T	D	.	.	I	Q	Y	A	K	G	V	G	P	N	R	K	K	K	L	K	K	L	G	I	E	T	L	R	D	L	L	E	F	F	P	R	D	Y	E	D	R	R	K	I	F	K	L	N	D	L	L	P	G	E	K	V	T	T	Q	G	K	I	V	S	V	E	T	K	K	F	.	.	Q	N	M	N	I	L
Template Known Secondary structure		S				.	.	S	S	S	S	S	S											T	T	T			S	S	G	G	G	T	S				S						S					S	S				S	S																		.	.	S	S
Template Predicted Secondary structure						.	.																																																																			.	.
Template SS confidence
		113	.	.	.			.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.			.	.	.	.	.	.
		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.			.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
Predicted Secondary structure																												.	.
Query SS confidence																												.	.
Query Sequence		T	V	H	L	M	V	N	N	I	A	V	K	C	I	F	F	N	Q	P	Y	L	K	K	K	I	E	.	.	L	N	Q	T	I	T	V	K	G	K	W	N	R	V	K	Q	E	I	T	G	N	R	V	F	F	N	S	Q	G	T	Q	T	Q	E	N	A	D	V	Q	L	E	P	V	Y	R	I	K	E	G	I	K	Q
Query Conservation																												.	.
Alig confidence																												.	.																																.	.
Template Conservation																																																													.	.
Template Sequence		T	A	V	L	S	D	G	L	V	H	V	P	L	K	W	F	N	Q	D	Y	L	Q	T	Y	L	K	Q	L	T	G	K	E	V	F	V	T	G	T	V	K	S	N	A	Y	T	G	Q	Y	E	I	H	N	A	E	V	T	P	K	E	.	.	G	E	Y	V	R	R	I	L	P	I	Y	R	L	T	S	G	I	S	Q
Template Known Secondary structure								S	S									S			T	T						T	T		S	S										S			T	T	S	S											S		.	.		S	S	S	S	S								B	T	T	B
Template Predicted Secondary structure																																																													.	.
Template SS confidence
		189	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.			.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.
		164	.	.	.	.	.	170	.	.	.	.	.	.	.			.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
Predicted Secondary structure																.	.
Query SS confidence																.	.
Query Sequence		K	Q	I	R	D	Q	I	R	Q	A	L	N	D	V	.	.	T	I	H	E	W	L	T	D	E	L	R	E	K	Y	K	L	E	T	L	D	F	T	L	N	T	L	H	H	P	K	S	K	E	D	L	L	R	A	R	R	T	Y	A	F	T	E	L	F	L	F	E	L	R	M	Q	W	L	N	R	L	E	K	S	S
Query Conservation																.	.
Alig confidence																.	.
Template Conservation
Template Sequence		K	Q	M	R	K	I	F	E	E	N	I	P	S	L	C	C	S	L	K	E	T	L	P	E	R	I	L	E	K	R	K	L	L	G	V	K	D	A	Y	Y	G	M	H	F	P	K	T	F	Y	H	L	E	K	A	R	E	R	L	A	Y	E	E	L	F	V	L	Q	L	A	F	Q	K	I	R	K	E	R	E	K	H
Template Known Secondary structure																							S													S									S		S	S
Template Predicted Secondary structure
Template SS confidence
		267	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.
		242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	E	A	I	E	I	D	Y	D	I	D	Q	V	K	S	F	I	D	R	L	P	F	E	L	T	E	A	Q	K	S	S	V	N	E	I	F	R	D	L	K	A	P	I	R	M	H	R	L	L	Q	G	D	V	G	S	G	K	T	V	V	A	A	I	C	M	Y	A	L	K	T	A	G	Y	Q	S	A	L	M	V	P
Query Conservation
Alig confidence			.
Template Conservation			.
Template Sequence		G	.	G	I	P	K	K	I	E	G	K	L	A	E	E	F	I	K	S	L	P	F	K	L	T	N	A	Q	K	R	A	H	Q	E	I	R	N	D	M	I	S	E	K	P	M	N	R	L	L	Q	G	D	V	G	S	G	K	T	V	V	A	Q	L	A	I	L	D	N	Y	E	A	G	F	Q	T	A	F	M	V	P
Template Known Secondary structure			.								T										S	S	S																			S	S	S										S	S	S	S																T	S							S
Template Predicted Secondary structure			.
Template SS confidence
		347		.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.
		322	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.		340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400
Predicted Secondary structure																				.
Query SS confidence																				.
Query Sequence		T	E	I	L	A	E	Q	H	A	E	S	L	M	A	L	F	G	D	.	S	M	N	V	A	L	L	T	G	S	V	K	G	K	K	R	K	I	L	L	E	Q	L	E	N	G	T	I	D	C	L	I	G	T	H	A	L	I	Q	D	D	V	I	F	H	N	V	G	L	V	I	T	D	E	Q	H	R	F	G	V	N
Query Conservation																				.
Alig confidence																				.																																																													.
Template Conservation																																																																																	.
Template Sequence		T	S	I	L	A	I	Q	H	Y	R	R	T	V	E	S	F	S	K	F	N	I	H	V	A	L	L	I	G	A	T	T	P	S	E	K	E	K	I	K	S	G	L	R	N	G	Q	I	D	V	V	I	G	T	H	A	L	I	Q	E	D	V	H	F	K	N	L	G	L	V	I	I	D	E	Q	H	R	F	E	A	.
Template Known Secondary structure																		T		S	S								S	S	S														S	S									T	T									S									S							.
Template Predicted Secondary structure																																																																																	.
Template SS confidence
		426	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.
		401	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	R	Q	L	L	R	E	K	G	A	M	T	N	V	L	F	M	T	A	T	P	I	P	R	T	L	A	I	S	V	F	G	E	M	D	V	S	S	I	K	Q	L	P	K	G	R	K	P	I	I	T	T	W	A	K	H	E	Q	Y	D	K	V	L	M	Q	M	T	S	E	L	K	K	G	R	Q	A	Y	V	I	C
Query Conservation
Alig confidence		.	.	.	.
Template Conservation		.	.	.	.
Template Sequence		.	.	.	.	L	M	N	K	G	K	M	V	D	T	L	V	M	S	A	T	P	I	P	R	S	M	A	L	A	F	Y	G	D	L	D	V	T	V	I	D	E	M	P	P	G	R	K	E	V	Q	T	M	L	V	P	M	D	R	V	N	E	V	Y	E	F	V	R	Q	E	V	M	R	G	G	Q	A	F	I	V	Y
Template Known Secondary structure		.	.	.	.			S	S	S	S									S	S											T			S	S									S	S											S	S	T												T	T	T	S			B			B
Template Predicted Secondary structure		.	.	.	.
Template SS confidence
						510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.
		481	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560
Predicted Secondary structure
Query SS confidence
Query Sequence		P	L	I	E	S	S	E	H	L	E	D	V	Q	N	V	V	A	L	Y	E	S	L	Q	Q	Y	Y	G	V	S	R	V	G	L	L	H	G	K	L	S	A	D	E	K	D	E	V	M	Q	K	F	S	N	H	E	I	N	V	L	V	S	T	T	V	V	E	V	G	V	N	V	P	N	A	T	F	M	M	I	Y	D
Query Conservation
Alig confidence						.	.	.	.	.	.	.	.	.												.	.
Template Conservation						.	.	.	.	.	.	.	.	.												.	.
Template Sequence		P	L	I	K	.	.	.	.	.	.	.	.	.	S	A	V	E	M	Y	E	Y	L	S	K	.	.	E	V	F	K	L	G	L	M	H	G	R	L	S	Q	E	E	K	D	R	V	M	L	E	F	A	E	G	R	Y	D	I	L	V	S	T	T	V	I	E	V	G	I	D	V	P	R	A	N	V	M	V	I	E	N
Template Known Secondary structure						.	.	.	.	.	.	.	.	.								S	G	G	G	.	.	S				B					S	S	S			S		S								T	T	T	S	S	S	B				S	S				S		S			T	T						B		S
Template Predicted Secondary structure						.	.	.	.	.	.	.	.	.												.	.
Template SS confidence
		586	.	.	.										590	.	.	.	.	.	.	.	.	.	600			.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.
		561	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640
Predicted Secondary structure
Query SS confidence
Query Sequence		A	D	R	F	G	L	S	T	L	H	Q	L	R	G	R	V	G	R	S	D	Q	Q	S	Y	C	V	L	I	A	S	P	K	T	E	T	G	I	E	R	M	T	I	M	T	Q	T	T	D	G	F	E	L	S	E	R	D	L	E	M	R	G	P	G	D	F	F	G	V	K	Q	S	G	L	P	D	F	L	V	A	N
Query Conservation
Alig confidence																																																																		.	.	.	.
Template Conservation																																																																		.	.	.	.
Template Sequence		P	E	R	F	G	L	A	Q	L	H	Q	L	R	G	R	V	G	R	G	G	Q	E	A	Y	C	F	L	V	V	G	D	V	G	E	E	A	M	E	R	L	R	F	F	T	L	N	T	D	G	F	K	I	A	E	Y	D	L	K	T	R	G	P	G	E	.	.	.	.	K	Q	H	G	L	S	G	F	K	V	A	D
Template Known Secondary structure			S	S	S		T	T								T	S			S	S	T	T									S														T				S										S	S					.	.	.	.				S	S			S
Template Predicted Secondary structure																																																																		.	.	.	.
Template SS confidence
		666	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.					730	.	.	.	.	.	.	.	.	.	740	.
		641	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	V	E	D	Y	R	M	L	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	Y	R	D	L	K	L	L	E
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		746	.	.	.	750	.	.	.	.