Job Description O50581 Confidence 99.94% Date Tue Jul 17 17:05:03 BST 2012 Rank 58 Aligned Residues 259 % Identity 17% Template c1cu1B_ PDB info PDB header:hydrolase Chain: B: PDB Molecule:protein (protease/helicase ns3); PDBTitle: crystal structure of an enzyme complex from hepatitis c2 virus Resolution 2.50 Å

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		282	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	P	I	R	M	H	R	L	L	Q	G	D	V	G	S	G	K	T	V	V	A	A	I	C	M	Y	A	L	K	T	A	G	Y	Q	S	A	L	M	V	P	T	E	I	L	A	E	Q	H	A	E	S	L	M	A	L	F	G	D	S	M	N	V	A	L	L	T	G	S	V	K	G	K	K	R	K	I	L	L	E	Q
Query Conservation
Alig confidence																													.	.	.																													.	.									.	.	.	.	.	.	.	.	.	.	.
Template Conservation																													.	.	.																													.	.									.	.	.	.	.	.	.	.	.	.	.
Template Sequence		P	Q	S	F	Q	V	A	H	L	H	A	P	T	G	S	G	K	S	T	K	V	P	A	A	Y	A	A	.	.	.	Q	G	Y	K	V	L	V	L	N	P	S	V	A	A	T	L	G	F	G	A	Y	M	S	K	A	H	G	I	.	.	D	P	N	I	R	T	G	V	.	.	.	.	.	.	.	.	.	.	.	R
Template Known Secondary structure			S	S										T	T	S		T	T	T									.	.	.	T	T								S																			.	.							S	S	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																													.	.	.																													.	.									.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		1194	.	.	.	.	.	1200	.	.	.	.	.	.	.	.	.	1210	.	.	.	.	.	.	.	.	.	1220				.	.	.	.	.	.	.	.	.	1230	.	.	.	.	.	.	.	.	.	1240	.	.	.	.	.	.	.	.			.	1250	.	.	.	.	.	.												.
		362	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.			.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.							.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.
Predicted Secondary structure																		.	.																										.	.	.	.	.	.
Query SS confidence																		.	.																										.	.	.	.	.	.
Query Sequence		L	E	N	G	T	I	D	C	L	I	G	T	H	A	L	I	.	.	Q	D	D	V	I	F	H	N	V	G	L	V	I	T	D	E	Q	H	R	F	G	V	N	Q	R	.	.	.	.	.	.	Q	L	L	R	E	K	G	A	M	T	N	V	L	F	M	T	A	T	P	I	P	R	T	L	A	I	S	V	F	G	E
Query Conservation																		.	.																										.	.	.	.	.	.
Alig confidence																		.	.																										.	.	.	.	.	.																							.	.	.	.	.
Template Conservation																																																																									.	.	.	.	.
Template Sequence		T	I	T	T	G	A	P	V	T	Y	S	T	Y	G	K	F	L	A	D	G	G	C	S	G	G	A	Y	D	I	I	I	C	D	E	C	H	S	T	D	S	T	T	I	L	G	I	G	T	V	L	D	Q	A	E	T	A	G	A	R	L	V	V	L	A	T	A	T	P	P	G	S	.	.	.	.	.	V	T	V	P
Template Known Secondary structure								S												T	T	S			T	T	S		S					T	T	T	T			S														T	T	T	T	T		S							S	S		T	T		.	.	.	.	.
Template Predicted Secondary structure																																																																									.	.	.	.	.
Template SS confidence
		1258	.	1260	.	.	.	.	.	.	.	.	.	1270	.	.	.	.	.	.	.	.	.	1280	.	.	.	.	.	.	.	.	.	1290	.	.	.	.	.	.	.	.	.	1300	.	.	.	.	.	.	.	.	.	1310	.	.	.	.	.	.	.	.	.	1320	.	.	.	.	.	.	.	.						.	1330	.	.
		434	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	D	V	S	S	I	K	Q	L	P	K	G	R	K	P	I	I	T	T	W	A	K	H	E	Q	Y	D	K	V	L	M	Q	M	T	S	E	L	K	K	G	R	Q	A	Y	V	I	C	P	L	I	E	S	S	E	H	L	E	D	V	Q	N	V	V	A	L	Y	E	S	L	Q	Q	Y	Y	G	V	S	R	V	G	L
Query Conservation
Alig confidence																													.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.	.	.	.											.	.
Template Conservation																													.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.	.	.	.											.	.
Template Sequence		H	P	N	I	E	E	V	A	L	S	N	T	G	E	I	P	F	Y	G	K	A	I	P	I	E	A	I	.	.	.	.	.	.	.	.	.	.	.	R	G	G	R	H	L	I	F	C	H	S	K	K	K	.	.	.	.	.	.	.	.	.	C	D	E	L	A	A	K	L	S	G	.	.	L	G	I	N	A	V	A
Template Known Secondary structure			T	T								S		S	S				T	T					G	G	G	T	.	.	.	.	.	.	.	.	.	.	.	S	S	S							S	S				.	.	.	.	.	.	.	.	.											.	.	T	T
Template Predicted Secondary structure																													.	.	.	.	.	.	.	.	.	.	.															.	.	.	.	.	.	.	.	.											.	.
Template SS confidence
		1333	.	.	.	.	.	.	1340	.	.	.	.	.	.	.	.	.	1350	.	.	.	.	.	.	.	.	.												1360	.	.	.	.	.	.	.	.	.	1370	.	.	.										.	.	.	.	.	.	1380	.	.	.			.	.	.	.	.	.	1390
		514	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.									.	.	560	.	.	.	.													.	.	.	.	.	570	.	.	.
Predicted Secondary structure																																														.	.	.	.	.	.	.	.								.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																														.	.	.	.	.	.	.	.								.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	H	G	K	L	S	A	D	E	K	D	E	V	M	Q	K	F	S	N	H	E	I	N	V	L	V	S	T	T	V	V	E	V	G	V	N	V	P	N	A	T	F	M	M	.	.	.	.	.	.	.	.	I	Y	D	A	D	R	F	.	.	.	.	.	.	.	.	.	.	.	.	G	L	S	T	L	H	Q	L	R
Query Conservation																																														.	.	.	.	.	.	.	.								.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence												.	.	.	.	.	.	.																					.							.	.	.	.	.	.	.	.								.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation												.	.	.	.	.	.	.																					.
Template Sequence		Y	Y	R	G	L	D	V	S	V	I	.	.	.	.	.	.	.	P	T	I	G	D	V	V	V	V	A	T	D	A	L	M	T	G	Y	T	G	.	D	F	D	S	V	I	D	C	N	T	C	V	T	Q	T	V	D	F	S	L	D	P	T	F	T	I	E	T	T	T	V	P	Q	D	A	V	S	R	S	Q	R	R
Template Known Secondary structure				T	T	S		G	G	G	S	.	.	.	.	.	.	.		S	S	S	S							T	T								.			S																		S	S	S											B
Template Predicted Secondary structure												.	.	.	.	.	.	.																					.
Template SS confidence
		1391	.	.	.	.	.	.	.	.	1400								.	.	.	.	.	.	.	.	.	1410	.	.	.	.	.	.	.	.	.	1420		.	.	.	.	.	.	.	.	.	1430	.	.	.	.	.	.	.	.	.	1440	.	.	.	.	.	.	.	.	.	1450	.	.	.	.	.	.	.	.	.	1460	.	.
		574	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	R	V	G	R	S	D	Q	Q	S	Y	C	V	L	I	A	S	P	K
Query Conservation
Alig confidence							.
Template Conservation							.
Template Sequence		G	R	T	G	R	.	G	R	R	G	I	Y	R	F	V	T	P	G	E
Template Known Secondary structure		T	T	S		S	.	S	S							S
Template Predicted Secondary structure							.
Template SS confidence
		1463	.	.	.	.		.	.	1470	.	.	.	.	.	.	.	.	.	1480

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions