Job Description O50581 Confidence 100.00% Date Tue Jul 17 17:05:03 BST 2012 Rank 49 Aligned Residues 266 % Identity 17% Template c1a1vA_ PDB info PDB header:hydrolase/dna Chain: A: PDB Molecule:protein (ns3 protein); PDBTitle: hepatitis c virus ns3 helicase domain complexed with single2 stranded sdna Resolution 2.20 Å

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		283	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	I	R	M	H	R	L	L	Q	G	D	V	G	S	G	K	T	V	V	A	A	I	C	M	Y	A	L	K	T	A	G	Y	Q	S	A	L	M	V	P	T	E	I	L	A	E	Q	H	A	E	S	L	M	A	L	F	G	D	S	M	N	V	A	L	L	T	G	S	V	K	G	K	K	R	K	I	L	L	E	Q	L
Query Conservation
Alig confidence																											.	.	.																												.	.											.	.	.	.	.	.	.	.	.	.	.
Template Conservation																											.	.	.																												.	.											.	.	.	.	.	.	.	.	.	.	.
Template Sequence		Q	S	F	Q	V	A	H	L	H	A	P	T	G	S	G	K	S	T	K	V	P	A	A	Y	A	.	.	.	A	Q	G	Y	K	V	L	V	L	N	P	S	V	A	A	T	L	G	F	G	A	Y	M	S	K	A	H	.	.	G	V	D	P	N	I	R	T	G	V	.	.	.	.	.	.	.	.	.	.	.	R	T
Template Known Secondary structure		S	S										T	T	S		T	T	T								.	.	.	T	T	T								S																	.	.	S								S	S	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																											.	.	.																												.	.											.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		195	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.				220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.			.	.	.	250	.	.	.	.	.	.												.	.
		363	.	.	.	.	.	.	370	.	.	.	.	.	.	.		.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.							.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.
Predicted Secondary structure																	.																										.	.	.	.	.	.
Query SS confidence																	.																										.	.	.	.	.	.
Query Sequence		E	N	G	T	I	D	C	L	I	G	T	H	A	L	I	.	Q	D	D	V	I	F	H	N	V	G	L	V	I	T	D	E	Q	H	R	F	G	V	N	Q	R	.	.	.	.	.	.	Q	L	L	R	E	K	G	A	M	T	N	V	L	F	M	T	A	T	P	I	P	R	T	L	A	I	S	V	F	G	E	M	D
Query Conservation																	.																										.	.	.	.	.	.
Alig confidence																	.																										.	.	.	.	.	.																							.	.	.	.	.
Template Conservation																																																																							.	.	.	.	.
Template Sequence		I	T	T	G	S	P	I	T	Y	S	T	Y	G	K	F	L	A	D	G	G	S	G	G	A	Y	D	I	I	I	C	D	E	C	H	S	T	D	A	T	S	I	L	G	I	G	T	V	L	D	Q	A	E	T	A	G	A	R	L	V	V	L	A	T	A	T	P	P	G	S	.	.	.	.	.	V	T	V	P	H	P
Template Known Secondary structure							S												T	T							S						T	T	T			S														T	T	T	T	T		S							S	S		T	T		.	.	.	.	.						T
Template Predicted Secondary structure																																																																							.	.	.	.	.
Template SS confidence
		259	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.						.	.	330	.	.	.
		436	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	S	S	I	K	Q	L	P	K	G	R	K	P	I	I	T	T	W	A	K	H	E	Q	Y	D	K	V	L	M	Q	M	T	S	E	L	K	K	G	R	Q	A	Y	V	I	C	P	L	I	E	S	S	E	H	L	E	D	V	Q	N	V	V	A	L	Y	E	S	L	Q	Q	Y	Y	G	V	S	R	V	G	L	L	H
Query Conservation
Alig confidence																												.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.	.	.	.												.	.
Template Conservation																												.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.	.	.	.												.	.
Template Sequence		N	I	E	E	V	A	L	S	T	T	G	E	I	P	F	Y	G	K	A	I	P	L	E	V	I	K	.	.	.	.	.	.	.	.	.	.	.	G	G	R	H	L	I	F	C	H	S	K	K	.	.	.	.	.	.	.	.	.	K	C	D	E	L	A	A	K	L	V	A	.	.	L	G	I	N	A	V	A	Y	Y
Template Known Secondary structure		T								S		S	S				T	T					T					.	.	.	.	.	.	.	.	.	.	.	S	S							S	S			.	.	.	.	.	.	.	.	.												.	.	T	T
Template Predicted Secondary structure																												.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.	.	.	.												.	.
Template SS confidence
		335	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360												.	.	.	.	.	.	.	.	.	370	.	.										.	.	.	.	.	.	.	380	.	.	.			.	.	.	.	.	.	390	.	.
		516	.	.	.	520	.	.	.	.	.	.	.	.	.	530								.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.			.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.
Predicted Secondary structure																	.	.	.	.	.	.	.																			.	.
Query SS confidence																	.	.	.	.	.	.	.																			.	.
Query Sequence		G	K	L	S	A	D	E	K	D	E	V	M	Q	K	F	.	.	.	.	.	.	.	S	N	H	E	I	N	V	L	V	S	T	T	V	V	E	V	G	V	.	.	N	V	P	N	A	T	F	M	M	I	Y	D	A	D	R	F	G	L	S	T	L	H	Q	L	R	G	R	V	G	R	S	D	Q	Q	S	Y	C	V
Query Conservation																	.	.	.	.	.	.	.																			.	.
Alig confidence																	.	.	.	.	.	.	.																			.	.																.															.
Template Conservation																																																											.															.
Template Sequence		R	G	L	D	V	S	V	I	P	T	S	G	D	V	V	V	V	A	T	D	A	L	F	T	G	D	F	D	S	V	I	D	C	N	T	V	T	Q	T	V	D	F	S	L	D	P	T	F	T	I	E	T	T	T	L	P	Q	.	D	A	V	S	R	T	Q	R	R	G	R	T	G	R	.	G	K	P	G	I	Y	R
Template Known Secondary structure		T	T	S		G	G	G	S		S	S	S	S							T	T						B	S																	S	S	S											.	B									T	T	B		S	.	S	S
Template Predicted Secondary structure																																																											.															.
Template SS confidence
		393	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.		450	.	.	.	.	.	.	.	.	.	460	.	.	.		.	.	.	.	.	.	470
		587	.	.	590	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	I	A	S	P	K	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		F	V	A	P	G	E	R
Template Known Secondary structure			S		S			B
Template Predicted Secondary structure
Template SS confidence
		475	.	.	.	.	480	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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