Job Description P60643 Confidence 2.09% Date Tue Jul 17 17:05:12 BST 2012 Rank 39 Aligned Residues 202 % Identity 14% Template c4ezdB_ PDB info PDB header:transport protein Chain: B: PDB Molecule:urea transporter 1; PDBTitle: crystal structure of the ut-b urea transporter from bos taurus bound2 to selenourea Resolution 2.50 Å

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		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	A	L	N	T	P	Y	F	G	I	L	L	S	V	I	P	F	F	L	A	T	I	L	F	E	K	T	N	R	F	F	L	F	A	P	L	F	V	S	M	V	F	G	V	A	F	L	Y	L	T	G	I	P	Y	K	T	Y	K	I	G	G	D	I	I	Y	F	F	L	E	P	A	T	I	C	F	A	I	P	L	Y
Query Conservation
Alig confidence																				.	.	.	.	.	.	.	.	.																																										.	.	.	.
Template Conservation																				.	.	.	.	.	.	.	.	.																																										.	.	.	.
Template Sequence		V	F	V	S	N	P	I	S	G	I	L	I	L	V	G	L	L	V	.	.	.	.	.	.	.	.	.	Q	N	P	W	C	A	L	N	G	C	V	G	T	V	V	S	T	L	T	A	L	L	L	S	Q	D	R	S	A	I	T	A	G	L	Q	G	Y	N	A	T	L	.	.	.	.	V	G	I	L	M	A	I	Y
Template Known Secondary structure		G	T																	.	.	.	.	.	.	.	.	.																							T	T								T	T	T	T	T						.	.	.	.								T
Template Predicted Secondary structure																				.	.	.	.	.	.	.	.	.																																										.	.	.	.
Template SS confidence
		65	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.										.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.					.	.	.	.	.	.	130	.
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.
Predicted Secondary structure																																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		K	K	R	E	V	L	V	K	H	W	H	R	I	I	G	G	I	G	I	G	T	V	V	A	L	L	I	I	L	T	F	A	K	L	A	Q	F	A	N	D	V	I	L	S	M	L	P	Q	A	A	T	T	A	I	A	L	P	V	S	A	G	I	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence						.	.	.																														.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation						.	.	.																														.
Template Sequence		S	D	K	G	.	.	.	N	Y	F	W	W	L	L	F	P	V	S	A	M	S	M	T	C	P	V	F	S	S	A	L	N	S	V	L	S	.	K	W	D	L	P	V	F	T	L	P	F	N	M	A	L	S	M	Y	L	S	A	T	G	H	Y	N	P	F	F	P	S	T	L	I	T	P	V	T	S	V	P	N	V
Template Known Secondary structure		B	T	T		.	.	.	T	T		G	G	G																							G	.	G	G	T				T	T																T	T		S	S	S		B								S
Template Predicted Secondary structure						.	.	.																														.
Template SS confidence
		132	.	.	.				.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.		.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.
					148	.	150	.	.	.	.	.	.	.	.	.	160	.	.							.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.																.	.	.	.	.	.
Query SS confidence		.	.	.																.	.	.	.	.	.
Query Sequence		.	.	.	G	I	K	E	L	T	S	L	A	V	I	L	N	G	V	.	.	.	.	.	.	I	I	Y	A	L	G	N	K	F	L	K	L	F	R	I	T	N	P	I	A	R	G	L	A	L	G	T	S	G	H	T	L	G	V	A	P	A	K	E	L	G	P	V	E	E	S	M	A	S	I	A	L	V	L	V	G
Query Conservation		.	.	.																.	.	.	.	.	.
Alig confidence		.	.	.																.	.	.	.	.	.																						.	.
Template Conservation																																															.	.
Template Sequence		T	W	P	D	L	S	A	L	Q	L	L	K	S	L	P	V	G	V	G	Q	I	Y	G	C	D	N	P	W	T	G	G	I	F	L	G	A	I	L	L	S	S	P	L	M	C	.	.	L	H	A	A	I	G	S	L	L	G	I	I	A	G	L	S	L	S	A	P	F	E	D	I	Y	A	G	L	W	G	F	N	S
Template Known Secondary structure			G	G	G																G	G	G	T																							.	.																	T	T								T	T	T	T	T
Template Predicted Secondary structure																																															.	.
Template SS confidence
		208	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.			.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.
		219	220	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	V	V	V	A	V	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	L	A	C	I	A	I
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		286	.	.	.	290	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions