Job Description P60643 Confidence 1.89% Date Tue Jul 17 17:05:12 BST 2012 Rank 50 Aligned Residues 118 % Identity 13% Template c3aqpB_ PDB info PDB header:membrane protein Chain: B: PDB Molecule:probable secdf protein-export membrane protein; PDBTitle: crystal structure of secdf, a translocon-associated membrane protein,2 from thermus thrmophilus Resolution 3.30 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.		.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Predicted Secondary structure																																			.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																			.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		I	N	H	L	A	L	N	T	P	Y	F	G	I	L	L	S	V	I	P	F	F	L	A	T	I	L	F	E	K	T	N	R	F	.	F	L	F	A	P	L	F	V	S	M	V	F	G	V	A	F	L	Y	L	T	G	I	P	Y	K	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																			.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																			.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		I	G	E	E	L	R	R	N	A	V	M	A	V	L	V	G	L	G	L	I	L	L	Y	V	A	F	R	F	D	W	T	F	G	V	A	S	I	L	A	V	A	H	D	V	A	I	V	A	G	M	Y	S	L	L	G	L	E	F	S	I	P	T	I	A	A	L	L	T	I	V	G	Y	S	I	N	D	S	I	V	V
Template Known Secondary structure																													S																											T
Template Predicted Secondary structure
Template SS confidence
		562	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.
																									61	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	K	I	G	G	D	I	I	Y	F	F	L	E	P	A	T	I	C	F	A	I	P	L	Y	K	K	R	E	V	L	V	K	H	W	H	R	I	I	G	G	I	G	I	G	T	V	V	A	L	L	I	I	L	T	F	A	K
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		S	D	R	I	R	E	N	Q	K	L	L	R	H	L	P	Y	A	E	L	V	N	R	S	I	N	Q	T	L	S	R	T	V	M	T	S	L	T	T	L	L	P	I	L	A	L	L	F	L	G	G	S	V	L	R	D	F	A	L	A	I	F	V	G	I	F	V	G	T	Y	S	S	I	Y	V	V	S	A	L	V	V
Template Known Secondary structure													S	S	S
Template Predicted Secondary structure
Template SS confidence
		642	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.
		118	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	W
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		722	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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