Job Description O52582 Confidence 99.37% Date Tue Jul 17 17:05:03 BST 2012 Rank 156 Aligned Residues 304 % Identity 12% Template c3vr8E_ PDB info PDB header:oxidoreductase Chain: E: PDB Molecule:flavoprotein subunit of complex ii; PDBTitle: mitochondrial rhodoquinol-fumarate reductase from the parasitic2 nematode ascaris suum Resolution 2.81 Å

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		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.
Predicted Secondary structure																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		I	V	V	V	G	A	V	A	G	G	A	T	C	A	S	Q	I	R	R	L	D	K	E	S	D	I	I	I	F	E	K	D	R	D	M	S	F	A	N	C	A	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																						.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																						.	.
Template Sequence		V	V	I	I	G	A	G	G	A	G	L	R	A	A	M	G	L	G	E	A	.	.	G	F	K	T	A	V	V	T	K	M	F	P	T	R	S	H	T	T	A	A	Q	G	G	I	N	A	A	L	G	S	M	N	P	D	D	W	K	W	H	F	Y	D	T	A	K	G	S	D	W	L	G	D	Q	N	A	M	H	Y
Template Known Secondary structure								S													T	.	.	T								S	S		G	G	G	S	G	G	G	G			S								S	S	S															T	T	T		S
Template Predicted Secondary structure																						.	.
Template SS confidence
		44	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.			.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.
																																														46	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	Y	V	I	G	E	V	V	E	D	R	R	Y	A	L	A	Y	T	P	E	K	F	Y	D	R	K	Q	I	T	V	K	T	Y	H	E	V
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	T	R	N	A	V	E	A	V	T	E	L	E	N	F	G	M	P	F	S	R	T	P	E	G	K	I	Y	Q	R	S	F	G	G	Q	S	N	N	Y	G	K	G	G	V	A	K	R	T	C	C	V	A	D	R	T	G	H	S	M	L	H	T	L	Y	G	N	S	L	R	C	H	C	T	F	F	I	E	Y	F	A
Template Known Secondary structure					T											T	T					B		T	T	S	S	B						T	T		B	S	T	T	T	T	S		B							S	T	T																T	T	T						S
Template Predicted Secondary structure
Template SS confidence
		122	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.
		82	.	.	.	.	.	.	.	90	.	.				.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
Predicted Secondary structure													.	.	.
Query SS confidence													.	.	.
Query Sequence		I	A	I	N	D	E	R	Q	T	V	S	.	.	.	V	L	N	R	K	T	N	E	Q	F	E	E	S	Y	D	K	L	I	L	S	P	G	A	S	A	N	S	L	G	F	E	S	D	I	T	F	T	L	R	N	L	E	D	T	D	A	I	D	Q	F	I	K	A	N	Q	V	D	K	V	L	V	V	G	A	G	Y
Query Conservation													.	.	.
Alig confidence													.	.	.
Template Conservation
Template Sequence		L	D	L	L	M	D	K	G	R	C	V	G	V	I	A	L	C	L	E	D	G	T	I	H	R	F	R	S	K	R	T	I	V	A	T	G	G	Y	G	R	A	Y	F	S	C	T	T	A	H	M	N	T	G	D	G	T	A	L	A	T	R	A	G	I	A	L	E	D	L	E	F	I	Q	F	H	P	T	G	I	Y
Template Known Secondary structure								T	T										T	T	T																			G	G	G	S	S	S	B	S	S		T	T												T	T			B	B		T	T										T
Template Predicted Secondary structure
Template SS confidence
		202	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.
		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.											.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.
Predicted Secondary structure																																			.	.	.	.	.	.	.	.	.	.
Query SS confidence																																			.	.	.	.	.	.	.	.	.	.
Query Sequence		V	S	L	E	V	L	E	N	L	N	E	R	G	L	H	P	T	L	I	H	R	S	D	K	I	N	K	L	M	D	A	D	M	.	.	.	.	.	.	.	.	.	.	N	Q	P	I	L	D	E	L	D	K	R	E	I	P	Y	R	L	N	E	E	I	N	A	I	N	G	N	E	I	T	F	K	S	G	K	V	E
Query Conservation																																			.	.	.	.	.	.	.	.	.	.
Alig confidence																																			.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	V	G	C	L	I	T	E	G	S	R	G	E	G	G	F	L	V	N	S	E	G	E	R	F	M	E	R	Y	A	P	K	A	K	D	L	A	S	R	D	V	V	S	R	A	E	T	I	E	I	M	E	G	R	G	V	G	P	E	K	D	H	I	Y	L	Q	L	H	H	L	P	A	E	Q	L	H	Q	R	L	P
Template Known Secondary structure		T	T			B									T						T	T				T						T	T	T	G	G	G	S															T	T	T			T	T	T	T		S						T	T	S									S
Template Predicted Secondary structure
Template SS confidence
		282	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.
		229	230	.	.	.	.	.	.		.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.											.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.
Predicted Secondary structure										.																															.	.	.	.	.	.	.	.	.	.
Query SS confidence										.																															.	.	.	.	.	.	.	.	.	.
Query Sequence		H	Y	D	M	I	I	E	G	.	V	G	T	H	P	N	S	K	F	I	E	S	S	N	I	K	L	D	R	K	G	F	I	P	V	N	D	K	F	E	.	.	.	.	.	.	.	.	.	.	T	N	V	P	N	I	Y	A	I	G	D	I	A	T	S	H	Y	R	H	V	D	L	P	A	S	V	P	L	A	W	G
Query Conservation										.																															.	.	.	.	.	.	.	.	.	.
Alig confidence										.																															.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	I	S	E	T	A	K	I	F	A	G	V	D	V	T	K	E	P	I	P	V	I	P	T	V	H	Y	N	M	G	G	I	P	T	N	Y	K	A	Q	V	I	K	Y	T	K	E	G	G	D	K	I	V	P	G	L	Y	A	C	G	E	C	A	C	H	S	V	H	G	A	N	R	L	G	A	N	S	L	L	D	A
Template Known Secondary structure															T	T	T	S												S		B			B		T	T								T	T	T												S	S	S			S		S	S	T	T	S			T	T
Template Predicted Secondary structure
Template SS confidence
		362	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.
		298	.	300	.	.	.	.	.	.	.	.	.	310
Predicted Secondary structure
Query SS confidence
Query Sequence		A	H	R	A	A	S	I	V	A	E	Q	I	A
Query Conservation
Alig confidence					.
Template Conservation					.
Template Sequence		V	V	F	.	G	R	A	C	S	I	N	I	K
Template Known Secondary structure					.
Template Predicted Secondary structure					.
Template SS confidence
		442	.	.		.	.	.	.	.	450	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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