Job Description O52582 Confidence 100.00% Date Tue Jul 17 17:05:03 BST 2012 Rank 47 Aligned Residues 374 % Identity 19% Template c3kljA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:nad(fad)-dependent dehydrogenase, nirb-family (n-terminal PDBTitle: crystal structure of nadh:rubredoxin oxidoreductase from clostridium2 acetobutylicum Resolution 2.10 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	K	I	V	V	V	G	A	V	A	G	G	A	T	C	A	S	Q	I	R	R	L	D	K	E	S	D	I	I	I	F	E	K	D	R	D	M	S	F	A	N	C	A	L	P	Y	V	I	G	E	V	V	E	D	R	R	Y	A	L	A	Y	T	P	E	K	F	Y	D	R	K	Q	I	T	V	K	T	Y	H	E	V
Query Conservation
Alig confidence																								.	.																																	.	.
Template Conservation																								.	.																																	.	.
Template Sequence		T	K	I	L	I	L	G	A	G	P	A	G	F	S	A	A	K	A	A	L	G	K	.	.	C	D	D	I	T	M	I	N	S	E	K	Y	L	P	Y	Y	R	P	R	L	N	E	I	I	A	K	N	K	S	I	D	D	.	.	I	L	I	K	K	N	D	W	Y	E	K	N	N	I	K	V	I	T	S	E	F	A
Template Known Secondary structure			S							S											T	T	T	.	.		S							S	S	S	S			B		G	G	G							S				G	G	G	.	.	T	B	S	S								T	T						S
Template Predicted Secondary structure																								.	.																																	.	.
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.			.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.			.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	A	I	N	D	E	R	Q	T	V	S	V	L	N	R	K	T	N	E	Q	F	E	E	S	Y	D	K	L	I	L	S	P	G	A	S	A	N	S	L	G	F	E	S	D	I	T	F	T	L	R	N	L	E	D	T	D	A	I	D	Q	F	I	K	A	N	Q	V	D	K	V	L	V	V	G	A	G	Y	V	S	L
Query Conservation
Alig confidence																																																														.	.	.	.	.	.
Template Conservation																																																														.	.	.	.	.	.
Template Sequence		T	S	I	D	P	N	N	K	L	V	T	L	K	S	G	E	K	I	K	Y	E	K	L	I	I	A	S	G	S	I	A	N	K	I	K	V	P	H	A	D	E	I	F	S	L	Y	S	Y	D	D	A	L	K	I	K	D	E	C	K	N	.	.	.	.	.	.	K	G	K	A	F	I	I	G	G	G	I	L	G	I
Template Known Secondary structure						T	T	T	T					T	T	S						S																T	T		S						S	S														.	.	.	.	.	.		S								S
Template Predicted Secondary structure																																																														.	.	.	.	.	.
Template SS confidence
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.							140	.	.	.	.	.	.	.	.	.	150	.	.	.
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.		.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Predicted Secondary structure																											.
Query SS confidence																											.
Query Sequence		E	V	L	E	N	L	N	E	R	G	L	H	P	T	L	I	H	R	S	D	K	I	N	K	L	.	M	D	A	D	M	N	Q	P	I	L	D	E	L	D	K	R	E	I	P	Y	R	L	N	E	E	I	N	A	I	N	G	N	E	I	T	F	K	S	G	K	V	E	H	Y	D	M	I	I	E	G	V	G	T	H
Query Conservation																											.
Alig confidence																											.																														.	.	.	.	.	.	.	.	.
Template Conservation																																																									.	.	.	.	.	.	.	.	.
Template Sequence		E	L	A	Q	A	I	I	D	S	G	T	P	A	S	I	G	I	I	L	E	Y	P	L	E	R	Q	L	D	R	D	G	G	L	F	L	K	D	K	L	D	R	L	G	I	K	I	Y	T	N	S	N	F	E	E	M	.	.	.	.	.	.	.	.	.	G	D	L	I	R	S	S	C	V	I	T	A	V	G	V	K
Template Known Secondary structure											T								S	S	S	S	S		T	T	T	S														T	T	T						S			G	G	G		.	.	.	.	.	.	.	.	.							S
Template Predicted Secondary structure																																																									.	.	.	.	.	.	.	.	.
Template SS confidence
		154	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.										.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320
Predicted Secondary structure
Query SS confidence
Query Sequence		P	N	S	K	F	I	E	S	S	N	I	K	L	D	R	K	G	F	I	P	V	N	D	K	F	E	T	N	V	P	N	I	Y	A	I	G	D	I	A	T	S	H	Y	R	H	V	D	L	P	A	S	V	P	L	A	W	G	A	H	R	A	A	S	I	V	A	E	Q	I	A	G	N	D	T	I	E	F	K	G	F
Query Conservation
Alig confidence												.	.																																		.	.	.	.	.	.																										.
Template Conservation												.	.																																		.	.	.	.	.	.																										.
Template Sequence		P	N	L	D	F	I	K	D	T	E	.	.	I	A	S	K	R	G	I	L	V	N	D	H	M	E	T	S	I	K	D	I	Y	A	C	G	D	V	A	E	F	Y	G	K	N	.	.	.	.	.	.	P	G	L	I	N	I	A	N	K	Q	G	E	V	A	G	L	N	A	C	G	E	D	A	S	Y	.	S	E	I
Template Known Secondary structure					G	G	G	T	T	S		.	.			B	S	S	S					T	T		B		S	S	T	T					G	G	G				T	T	B		.	.	.	.	.	.																			T	T						.
Template Predicted Secondary structure												.	.																																		.	.	.	.	.	.																										.
Template SS confidence
		225	.	.	.	.	230	.	.	.	.			.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.							.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.		.	.	.
		321	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400
Predicted Secondary structure
Query SS confidence
Query Sequence		L	G	N	N	I	V	K	F	F	D	Y	T	F	A	S	V	G	V	K	P	N	E	L	K	Q	F	D	Y	K	M	V	E	V	T	Q	G	A	H	A	N	Y	Y	P	G	N	S	P	L	H	L	R	V	Y	Y	D	T	S	N	R	Q	I	L	R	A	A	A	V	G	K	E	G	A	D	K	R	I	D	V	L	S
Query Conservation
Alig confidence																																	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.														.	.	.
Template Conservation																																	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.														.	.	.
Template Sequence		I	P	S	P	I	L	K	V	S	G	I	S	I	I	S	C	G	D	I	E	N	N	K	P	S	K	V	F	R	S	T	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	E	D	K	Y	I	V	C	M	L	K	.	.	E	N	K	I	D	A	A	A	V	I	G	D	V	.	.	.	S	L	G	T	K	L	K
Template Known Secondary structure										T	T							S			T	T				S							.	.	.	.	.	.	.	.	.	.	.	.	.		S	S									.	.	T	T									S			.	.	.
Template Predicted Secondary structure																																	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.														.	.	.
Template SS confidence
		296	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.														.	.	.	330	.	.	.	.	.	.	.			.	.	340	.	.	.	.	.	.	.	.	.	350				.	.	.	.	.	.	.
		401	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	A	M	M	N	Q	L	T	V	D	E	L	T	E	F	E	V	A	Y	A	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	A	I	D	S	S	K	S	F	D	N	I	S	S	L	D	A	I	L	N	N
Template Known Secondary structure						T	T		B		S			S							T	T
Template Predicted Secondary structure
Template SS confidence
		358	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions