Phyre 2 alignment of O52582 with c3hyxC

Job Description O52582
Confidence 100.00% Date Tue Jul 17 17:05:03 BST 2012

Rank 54 Aligned Residues 327

% Identity 14% Template c3hyxC_

PDB info PDB header:oxidoreductase Chain: C: PDB Molecule:sulfide-quinone reductase; PDBTitle: 3-d x-ray structure of the sulfide:quinone oxidoreductase from aquifex2 aeolicus in complex with aurachin c

Resolution 2.90 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure
Query SS confidence
Query Sequence	P	K	I	V	V	V	G	A	V	A	G	G	A	T	C	A	S	Q	I	R	R	L	D	K	E	S	D	I	I	I	F	E	K	D	R	D	M	S	F	A	N	C	A	L	P	Y	V	I	G	E	V	V	E	D	R	R	Y	A	L	A	Y	T	P	E	K	F	Y	D	R	K	Q	I	T	V	K	T	Y	H	E	V
Query Conservation
Alig confidence																																									.																.	.																				.
Template Conservation																																									.																.	.																				.
Template Sequence	K	H	V	V	V	I	G	G	G	V	G	G	I	A	T	A	Y	N	L	R	N	L	M	P	D	L	K	I	T	L	I	S	D	R	P	Y	F	G	F	T	.	P	A	F	P	H	L	A	M	G	W	R	K	F	E	D	.	.	I	S	V	P	L	A	P	L	L	P	K	F	N	I	E	F	I	N	E	.	K	A
Template Known Secondary structure								S	S															T	T								S	S	S					G	.	G	G							T		S		G	G	G	.	.	G				S	T	T	T	G	G	G	G	T						S	.
Template Predicted Secondary structure																																									.																.	.																				.
Template SS confidence
	3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.		.	.	.	.	.	.	.	50	.	.	.	.	.	.	.			.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.		.	.

	82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
Predicted Secondary structure
Query SS confidence
Query Sequence	I	A	I	N	D	E	R	Q	T	V	S	V	L	N	R	K	T	N	E	Q	F	E	E	S	Y	D	K	L	I	L	S	P	G	A	S	A	N	S	L	G	F	E	S	D	I	T	F	T	L	R	N	L	E	D	T	D	A	I	D	Q	F	I	K	A	N	Q	V	D	K	V	L	V	V	G	A	G	Y	V	S	L
Query Conservation
Alig confidence																														.	.	.	.
Template Conservation																														.	.	.	.
Template Sequence	E	S	I	D	P	D	A	N	T	V	T	T	Q	S	G	K	K	I	E	Y	D	Y	L	V	I	A	T	G	P	.	.	.	.	K	L	V	F	G	A	E	G	Q	E	E	N	S	T	S	I	C	T	A	E	H	A	L	E	T	Q	K	K	L	Q	E	L	Y	A	N	P	G	P	V	V	I	G	A	I	P	G	V
Template Known Secondary structure					T	T	T	T					T	T							S									.	.	.	.						S	B	T						B			S	S																	S										T	T
Template Predicted Secondary structure																														.	.	.	.
Template SS confidence
	79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.					.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.

	162	.	.	.	.	.	.	.	170															.	.	.	.	.	.	.	.	.	180	.	.	.	.	.				.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.
Predicted Secondary structure										.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.																																							.
Query SS confidence										.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.																																							.
Query Sequence	E	V	L	E	N	L	N	E	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	L	H	P	T	L	I	H	R	S	D	K	I	N	K	.	.	.	L	M	D	A	D	M	N	Q	P	I	L	D	E	L	D	K	R	E	I	P	Y	R	L	N	E	E	I	N	A	I	N	G	N	E	I	T	F	K	.
Query Conservation										.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.																																							.
Alig confidence										.	.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.																																							.
Template Conservation
Template Sequence	S	F	G	P	A	Y	E	F	A	L	M	L	H	Y	E	L	K	K	R	G	I	R	Y	K	V	P	M	T	F	I	T	S	E	P	Y	L	G	H	F	G	V	G	G	I	G	A	S	K	R	L	V	E	D	L	F	A	E	R	N	I	D	W	I	A	N	V	A	V	K	A	I	E	P	D	K	V	I	Y	E	D
Template Known Secondary structure																			T	T		G	G	G								S	S	S	S	T	T		T	T	T	T		S	T	T												T	T						S								S	S
Template Predicted Secondary structure
Template SS confidence
	155	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.

				224	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.		.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.		.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290			.	.	.	.	.	.
Predicted Secondary structure	.	.	.																										.																			.																									.	.
Query SS confidence	.	.	.																										.																			.																									.	.
Query Sequence	.	.	.	S	G	K	V	E	H	Y	D	M	I	I	E	G	V	G	T	H	P	N	S	K	F	I	E	S	.	S	N	I	K	L	D	R	K	G	F	I	P	V	N	D	K	F	E	.	T	N	V	P	N	I	Y	A	I	G	D	I	A	T	S	H	Y	R	H	V	D	L	P	A	.	.	S	V	P	L	A	W
Query Conservation	.	.	.																										.																			.																									.	.
Alig confidence	.	.	.																										.																			.																									.	.
Template Conservation
Template Sequence	L	N	G	N	T	H	E	V	P	A	K	F	T	M	F	M	P	S	F	Q	G	P	E	V	V	A	S	A	G	D	K	V	A	N	P	A	N	K	M	V	I	V	N	R	C	F	Q	N	P	T	Y	K	N	I	F	G	V	G	V	V	T	A	I	P	P	I	E	K	T	P	I	P	T	G	V	P	K	T	G	M
Template Known Secondary structure	T	T	S								S																	S		T	T	T	B		T	T	T			B				T	T	S	B		S	S		T	T					S	T	T	B					S	S			S	S
Template Predicted Secondary structure
Template SS confidence
	236	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.

	297	.	.	300	.	.	.	.	.	.	.	.	.	310					.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.
Predicted Secondary structure															.	.	.	.
Query SS confidence															.	.	.	.
Query Sequence	G	A	H	R	A	A	S	I	V	A	E	Q	I	A	.	.	.	.	G	N	D	T	I	E	F	K	G	F	L	G	N	N	I	V	K	F	F	D	Y	T	F	A	S	V
Query Conservation															.	.	.	.
Alig confidence															.	.	.	.
Template Conservation
Template Sequence	M	I	E	Q	M	A	M	A	V	A	H	N	I	V	N	D	I	R	N	N	P	D	K	Y	A	P	R	L	S	A	I	C	I	A	D	F	G	E	D	A	G	F	F	F
Template Known Secondary structure																		T	T																		S	S	S
Template Predicted Secondary structure
Template SS confidence
	316	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

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Lawrence Kelley, Benjamin Jefferys
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