Phyre 2 alignment of O52582 with c3ef6A

Job Description O52582
Confidence 100.00% Date Tue Jul 17 17:05:03 BST 2012

Rank 49 Aligned Residues 389

% Identity 17% Template c3ef6A_

PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:toluene 1,2-dioxygenase system ferredoxin--nad(+) PDBTitle: crystal structure of toluene 2,3-dioxygenase reductase

Resolution 1.80 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure
Query SS confidence
Query Sequence	P	K	I	V	V	V	G	A	V	A	G	G	A	T	C	A	S	Q	I	R	R	L	D	K	E	S	D	I	I	I	F	E	K	D	R	D	M	S	F	A	N	C	A	L	P	Y	V	I	G	E	V	V	E	D	R	R	Y	A	L	A	Y	T	P	E	K	F	Y	D	R	K	Q	I	T	V	K	T	Y	H	E	V
Query Conservation
Alig confidence																																																									.	.
Template Conservation																																																									.	.
Template Sequence	T	H	V	A	I	I	G	N	G	V	G	G	F	T	T	A	Q	A	L	R	A	E	G	F	E	G	R	I	S	L	I	G	D	E	P	H	L	P	Y	D	R	P	S	L	S	K	A	V	L	D	G	S	L	E	R	P	.	.	P	I	L	A	E	A	D	W	Y	G	E	A	R	I	D	M	L	T	G	P	E	V
Template Known Secondary structure									S													T	T			S								S	S	S	S	S	B		S	G	G	G	G	T					T	S	S	S	S		.	.		B	S	S		T	T					T	T						S
Template Predicted Secondary structure																																																									.	.
Template SS confidence
	3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.			.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80

	82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
Predicted Secondary structure
Query SS confidence
Query Sequence	I	A	I	N	D	E	R	Q	T	V	S	V	L	N	R	K	T	N	E	Q	F	E	E	S	Y	D	K	L	I	L	S	P	G	A	S	A	N	S	L	G	F	E	S	D	I	T	F	T	L	R	N	L	E	D	T	D	A	I	D	Q	F	I	K	A	N	Q	V	D	K	V	L	V	V	G	A	G	Y	V	S	L
Query Conservation
Alig confidence																																							.	.	.	.
Template Conservation																																							.	.	.	.
Template Sequence	T	A	L	D	V	Q	T	R	T	I	S	L	D	D	G	T	T	L	S	A	D	A	I	V	I	A	T	G	S	R	A	R	T	M	A	L	P	G	.	.	.	.	S	Q	L	P	G	V	V	T	L	R	T	Y	G	D	V	Q	V	L	R	D	S	W	T	S	A	T	R	L	L	I	V	G	G	G	L	I	G	C
Template Known Secondary structure					T	T	T	T					T	T	S						S																T	T	.	.	.	.	T	T	S	T	T						S													T	T									S
Template Predicted Secondary structure																																							.	.	.	.
Template SS confidence
	81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.					.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.

	162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.		.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.					.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.
Predicted Secondary structure																												.																															.	.	.	.
Query SS confidence																												.																															.	.	.	.
Query Sequence	E	V	L	E	N	L	N	E	R	G	L	H	P	T	L	I	H	R	S	D	K	I	N	K	L	M	D	.	A	D	M	N	Q	P	I	L	D	E	L	D	K	R	E	I	P	Y	R	L	N	E	E	I	N	A	I	N	G	N	.	.	.	.	E	I	T	F	K	S	G	K	V	E	H	Y	D	M	I	I	E	G
Query Conservation																												.																															.	.	.	.
Alig confidence																												.																															.	.	.	.
Template Conservation
Template Sequence	E	V	A	T	T	A	R	K	L	G	L	S	V	T	I	L	E	A	G	D	E	L	L	V	R	V	L	G	R	R	I	G	A	W	L	R	G	L	L	T	E	L	G	V	Q	V	E	L	G	T	G	V	V	G	F	S	G	E	G	Q	L	E	Q	V	M	A	S	D	G	R	S	F	V	A	D	S	A	L	I	C
Template Known Secondary structure									T	T								S	S	S	S	S	S																				T						S									S	S	S							T	T	S						S
Template Predicted Secondary structure
Template SS confidence
	157	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.

	237	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	V	G	T	H	P	N	S	K	F	I	E	S	S	N	I	K	L	D	R	K	G	F	I	P	V	N	D	K	F	E	T	N	V	P	N	I	Y	A	I	G	D	I	A	T	S	H	Y	R	H	V	D	L	P	A	S	V	P	L	A	W	G	A	H	R	A	A	S	I	V	A	E	Q	I	A	G	N	D	T	I	E
Query Conservation
Alig confidence																.	.																																			.																												.
Template Conservation																.	.																																			.																												.
Template Sequence	V	G	A	E	P	A	D	Q	L	A	R	Q	A	G	L	.	.	A	C	D	R	G	V	I	V	D	H	C	G	A	T	L	A	K	G	V	F	A	V	G	D	V	A	S	W	P	L	R	A	G	G	.	R	R	S	L	E	T	Y	M	N	A	Q	R	Q	A	A	A	V	A	A	A	I	L	G	K	N	V	S	.
Template Known Secondary structure	S												T	T		.	.		B	S	S	S					T	T	S	B		S	S	T	T					G	G	G					B	T	T	S	S	.																						T	T					.
Template Predicted Secondary structure																.	.																																			.																												.
Template SS confidence
	237	.	.	240	.	.	.	.	.	.	.	.	.	250	.			.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.		.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.

	317	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	F	K	G	F	L	G	N	N	I	V	K	F	F	D	Y	T	F	A	S	V	G	V	K	P	N	E	L	K	Q	F	D	Y	K	M	V	E	V	T	Q	G	A	H	A	N	Y	Y	P	G	N	S	P	L	H	L	R	V	Y	Y	D	T	S	N	R	Q	I	L	R	A	A	A	V	G	K	E	G	A	D	K	R	I
Query Conservation
Alig confidence	.																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.	.	.
Template Conservation	.																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.	.	.
Template Sequence	.	A	P	Q	L	P	V	S	W	T	E	I	A	G	H	R	M	Q	M	A	G	D	I	E	G	P	G	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	V	S	R	G	M	P	G	S	G	A	A	L	L	F	R	L	Q	E	R	R	I	Q	A	V	V	A	V	D	.	.	.	A	P	R	D	F
Template Known Secondary structure	.			B									T	T							S		S	S	S	S	S		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					S		T	T	S	S	S								T	T									S	.	.	.
Template Predicted Secondary structure	.																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.	.	.
Template SS confidence
		313	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.																340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.				.	370	.	.	.

	397	.	.	400	.	.	.	.	.	.	.	.	.			410	.	.	.	.	.	.	.	.	.
Predicted Secondary structure														.	.
Query SS confidence														.	.
Query Sequence	D	V	L	S	M	A	M	M	N	Q	L	T	V	.	.	D	E	L	T	E	F	E	V	A	Y
Query Conservation														.	.
Alig confidence														.	.
Template Conservation
Template Sequence	A	L	A	T	R	L	V	E	A	R	A	A	I	E	P	A	R	L	A	D	L	S	N	S	M
Template Known Secondary structure										T		B									T	T	S		G
Template Predicted Secondary structure
Template SS confidence
	374	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

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Lawrence Kelley, Benjamin Jefferys
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