Job Description O52582 Confidence 98.86% Date Tue Jul 17 17:05:03 BST 2012 Rank 229 Aligned Residues 184 % Identity 14% Template c3dmeB_ PDB info PDB header:structural genomics, unknown function Chain: B: PDB Molecule:conserved exported protein; PDBTitle: crystal structure of conserved exported protein from bordetella2 pertussis. northeast structural genomics target ber141 Resolution 1.70 Å

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		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40										.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.
Predicted Secondary structure																																							.	.	.	.	.	.	.	.	.
Query SS confidence																																							.	.	.	.	.	.	.	.	.
Query Sequence		I	V	V	V	G	A	V	A	G	G	A	T	C	A	S	Q	I	R	R	L	D	K	E	S	D	I	I	I	F	E	K	D	R	D	M	S	F	.	.	.	.	.	.	.	.	.	A	N	C	A	L	P	Y	V	I	G	E	V	V	E	D	R	R	Y	A	L	A	Y	T	P	E	K	F	Y	D	R	K	Q	I	T
Query Conservation																																							.	.	.	.	.	.	.	.	.
Alig confidence																						.	.																.	.	.	.	.	.	.	.	.
Template Conservation																						.	.
Template Sequence		C	I	V	I	G	A	G	V	V	G	L	A	I	A	R	A	L	A	A	G	.	.	G	H	E	V	L	V	A	E	A	A	E	G	I	G	T	G	T	S	S	R	N	S	E	V	I	H	A	G	I	Y	Y	P	A	D	S	L	K	A	R	L	C	V	R	G	K	H	L	L	Y	E	Y	C	A	A	R	G	V	P
Template Known Secondary structure								S													T	.	.	T								S	S	S	S	T	T		S	G	G	G	S	S									S	S		T	T																						T
Template Predicted Secondary structure																						.	.
Template SS confidence
		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.			.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
		75	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	K	T	Y	H	E	V	I	A	I	N	D	E	R	Q	T	V	S	V	L	N	R	K	T	N	E	Q	F	E	E	S	Y	D	K	L	I	L	S	P	G	A	S	A	N	S	L	G	F	E	S	D	I	T	F	T	L	R	N	L	E	D	T	D	A	I	D	Q	F	I	K	A	N	Q	V	D	K	V	L	V	V
Query Conservation
Alig confidence														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		H	Q	R	L	G	K	L	I	V	A	T	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	A	E	A	S	Q	L	D	S	I	A	R	R	A	G	A	N	G	V
Template Known Secondary structure													S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					T	T											T	T
Template Predicted Secondary structure														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		85	.	.	.	.	90	.	.	.	.	.	.																																																		.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.
		155	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.								220	.	.	.	.	.	.	.
Predicted Secondary structure																																																																			.	.	.	.	.	.	.
Query SS confidence																																																																			.	.	.	.	.	.	.
Query Sequence		G	A	G	Y	V	S	L	E	V	L	E	N	L	N	E	R	G	L	H	P	T	L	I	H	R	S	D	K	I	N	K	L	M	D	A	D	M	N	Q	P	I	L	D	E	L	D	K	R	E	I	P	Y	R	L	N	E	E	I	N	A	I	N	G	N	E	.	.	.	.	.	.	.	I	T	F	K	S	G	K	V
Query Conservation																																																																			.	.	.	.	.	.	.
Alig confidence																																																																			.	.	.	.	.	.	.
Template Conservation
Template Sequence		D	D	L	Q	H	I	D	G	A	A	A	R	R	L	E	P	A	L	H	C	T	A	A	L	V	S	P	S	T	G	I	V	D	S	H	A	L	M	L	A	Y	Q	G	D	A	E	S	D	G	A	Q	L	V	F	H	T	P	L	I	A	G	R	V	R	P	E	G	G	F	E	L	D	F	G	G	A	E	P	M	T
Template Known Secondary structure																	T	T				S						T	T																				T	T						S										T	T	S	S							S	S	S
Template Predicted Secondary structure
Template SS confidence
		116	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.
		228	.	230	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	H	Y	D	M	I	I	E	G	V	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	S	C	R	V	L	I	N	A	A	G
Template Known Secondary structure												G
Template Predicted Secondary structure
Template SS confidence
		196	.	.	.	200	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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