Phyre 2 alignment of O52582 with c2vdcI

Job Description O52582
Confidence 99.95% Date Tue Jul 17 17:05:03 BST 2012

Rank 69 Aligned Residues 277

% Identity 17% Template c2vdcI_

PDB info PDB header:oxidoreductase Chain: I: PDB Molecule:glutamate synthase [nadph] small chain; PDBTitle: the 9.5 a resolution structure of glutamate synthase from2 cryo-electron microscopy and its oligomerization behavior3 in solution: functional implications.

Resolution 9.50 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure
Query SS confidence
Query Sequence	P	K	I	V	V	V	G	A	V	A	G	G	A	T	C	A	S	Q	I	R	R	L	D	K	E	S	D	I	I	I	F	E	K	D	R	D	M	S	F	A	N	C	A	L	P	Y	V	I	G	E	V	V	E	D	R	R	Y	A	L	A	Y	T	P	E	K	F	Y	D	R	K	Q	I	T	V	K	T	Y	H	E	V
Query Conservation
Alig confidence																							.	.																		.	.	.	.	.
Template Conservation																							.	.																		.	.	.	.	.
Template Sequence	L	S	V	G	V	I	G	A	G	P	A	G	L	A	A	A	E	E	L	R	A	K	.	.	G	Y	E	V	H	V	Y	D	R	Y	D	R	M	G	G	L	L	.	.	.	.	.	V	Y	G	I	P	G	F	K	L	E	K	S	V	V	E	R	R	V	K	L	L	A	D	A	G	V	I	Y	H	P	N	F	E	V
Template Known Secondary structure									S														.	.	T								S	S	S	S		S	T			.	.	.	.	.			T	S		T	T	T	S															T	T					T	T			B
Template Predicted Secondary structure																							.	.																		.	.	.	.	.
Template SS confidence
	148	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.			170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.						.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220

	82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.														.	.	.	.	.	.
Predicted Secondary structure																																																														.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																														.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence	I	A	I	N	D	E	R	Q	T	V	S	V	L	N	R	K	T	N	E	Q	F	E	E	S	Y	D	K	L	I	L	S	P	G	A	S	A	N	S	L	G	F	E	S	D	I	T	F	T	L	R	N	L	E	D	T	D	A	I	D	Q	F	.	.	.	.	.	.	.	.	.	.	.	.	.	I	K	A	N	Q	V
Query Conservation																																																														.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence	.	.	.	.	.	.	.	.	.	.	.																																																			.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	.	.	.	.	.	.	.	.	.	.	.	G	R	D	A	S	L	P	E	L	R	R	K	H	V	A	V	L	V	A	T	G	V	Y	K	A	R	D	I	K	A	P	G	S	G	L	G	N	I	V	A	A	L	D	Y	L	T	T	S	N	K	V	S	L	G	D	T	V	E	A	Y	E	N	G	S	L	N	A	A	G
Template Known Secondary structure	.	.	.	.	.	.	.	.	.	.	.	T	T	T	B							S	S		S														T	T		S			T	T	T	T																	T	T	T		S	S			T	T		S
Template Predicted Secondary structure	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
												221	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.

	149	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																								.	.	.	.	.	.	.	.	.
Query SS confidence																																																																								.	.	.	.	.	.	.	.	.
Query Sequence	D	K	V	L	V	V	G	A	G	Y	V	S	L	E	V	L	E	N	L	N	E	R	G	L	H	P	T	L	I	H	R	S	D	K	I	N	K	L	M	D	A	D	M	N	Q	P	I	L	D	E	L	D	K	R	E	I	P	Y	R	L	N	E	E	I	N	A	I	N	G	N	E	.	.	.	.	.	.	.	.	.
Query Conservation																																																																								.	.	.	.	.	.	.	.	.
Alig confidence																																.	.	.																																						.	.	.	.	.	.	.	.	.
Template Conservation																																.	.	.
Template Sequence	K	H	V	V	V	L	G	G	G	D	T	A	M	D	C	V	R	T	A	I	R	Q	G	A	T	S	V	K	C	L	Y	.	.	.	R	R	D	R	K	N	M	P	G	S	Q	R	E	V	A	H	A	E	E	E	G	V	E	F	I	W	Q	A	A	P	E	G	F	T	G	D	T	V	V	T	G	V	R	A	V	R
Template Known Secondary structure	S							S	S													T	T		S							.	.	.	S	S		S	T	T		S	S											T	T							S	S	S											T	T
Template Predicted Secondary structure																																.	.	.
Template SS confidence
	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320				.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.

																220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.			.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.		.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.
Predicted Secondary structure	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.	.																				.
Query SS confidence	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.	.																				.
Query Sequence	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	T	F	K	S	G	K	V	E	H	Y	D	M	I	I	E	G	V	G	T	H	P	N	S	K	.	.	F	I	E	S	S	N	I	K	L	D	R	K	G	F	I	P	V	N	D	.	K	F	E	T	N	V	P	N	I	Y	A	I	G	D	I	A	T	S
Query Conservation	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.	.																				.
Alig confidence	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.	.																				.
Template Conservation
Template Sequence	I	H	L	G	V	A	D	A	T	G	R	Q	T	P	Q	V	I	E	G	S	E	F	T	V	Q	A	D	L	V	I	K	A	L	G	F	E	P	E	D	L	P	N	A	F	D	E	P	E	L	K	V	T	R	W	G	T	L	L	V	D	H	R	T	K	M	T	N	M	D	G	V	F	A	A	G	D	I	V	R	G
Template Known Secondary structure										T	T																S						S													S	T	T	S		B		T	T	S	S	B				T	T	T		B		S	S	T	T					G	G	G	G	S	S
Template Predicted Secondary structure
Template SS confidence
	367	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.

	282	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	H	Y	R	H	V	D	L	P	A	S	V	P	L	A	W	G	A	H	R	A	A	S	I	V	A	E	Q	I
Query Conservation
Alig confidence	.	.	.	.	.	.	.	.	.	.
Template Conservation	.	.	.	.	.	.	.	.	.	.
Template Sequence	.	.	.	.	.	.	.	.	.	.	A	S	L	V	V	W	A	I	R	D	G	R	D	A	A	E	G	I
Template Known Secondary structure	.	.	.	.	.	.	.	.	.	.			S
Template Predicted Secondary structure	.	.	.	.	.	.	.	.	.	.
Template SS confidence
											447	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

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Lawrence Kelley, Benjamin Jefferys
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