Job Description O52582 Confidence 100.00% Date Tue Jul 17 17:05:03 BST 2012 Rank 13 Aligned Residues 413 % Identity 19% Template c2eq7B_ PDB info PDB header:oxidoreductase Chain: B: PDB Molecule:2-oxoglutarate dehydrogenase e3 component; PDBTitle: crystal structure of lipoamide dehydrogenase from thermus thermophilus2 hb8 with psbdo Resolution 1.80 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.																							.	.	.	.	.	.	50	.	.	.	.	.	.	.	.
Predicted Secondary structure																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		M	P	K	I	V	V	V	G	A	V	A	G	G	A	T	C	A	S	Q	I	R	R	L	D	K	E	S	D	I	I	I	F	E	K	D	R	D	M	S	F	A	N	C	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	L	P	Y	V	I	G	E	V	V	E	D	R	R	Y
Query Conservation																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																									.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																									.	.
Template Sequence		M	Y	D	L	L	V	I	G	A	G	P	G	G	Y	V	A	A	I	R	A	A	Q	L	.	.	G	M	K	V	G	V	V	E	K	E	K	A	L	G	G	T	C	L	R	V	G	C	I	P	S	K	A	L	L	E	T	T	E	R	I	Y	E	A	K	K	G	L	L	G	A	K	V	K	G	V	E	L	D	L	P
Template Known Secondary structure											S													T	.	.	T								S	S	S	S	S	S							S																						T	T				S
Template Predicted Secondary structure																									.	.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.			.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
		59	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.					.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.
Predicted Secondary structure																		.	.	.	.
Query SS confidence																		.	.	.	.
Query Sequence		A	L	A	Y	T	P	E	K	F	Y	D	R	K	Q	I	T	.	.	.	.	V	K	T	Y	H	E	V	I	A	I	N	D	E	R	Q	T	V	S	V	L	N	R	K	T	N	E	Q	F	E	E	S	Y	D	K	L	I	L	S	P	G	A	S	A	N	S	L	G	F	E	S	D	I	T	F	T	L	R	N	L	E
Query Conservation																		.	.	.	.
Alig confidence																		.	.	.	.
Template Conservation
Template Sequence		A	L	M	A	H	K	D	K	V	V	Q	A	N	T	Q	G	V	E	F	L	F	K	K	N	G	I	A	R	H	Q	G	T	A	R	F	L	S	E	R	K	V	L	V	E	E	T	G	E	E	L	E	A	R	Y	I	L	I	A	T	G	S	A	P	L	I	P	P	W	A	Q	V	D	Y	E	R	V	V	T	S	T
Template Known Secondary structure																									T	T						S					S	S	S	S					T	T	T	T																				T	T	B				S	S	S
Template Predicted Secondary structure
Template SS confidence
		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
		135	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	T	D	A	I	D	Q	F	I	K	A	N	Q	V	D	K	V	L	V	V	G	A	G	Y	V	S	L	E	V	L	E	N	L	N	E	R	G	L	H	P	T	L	I	H	R	S	D	K	I	N	K	L	M	D	A	D	M	N	Q	P	I	L	D	E	L	D	K	R	E	I	P	Y	R	L	N	E	E	I	N	A
Query Conservation
Alig confidence										.	.	.	.	.
Template Conservation										.	.	.	.	.
Template Sequence		E	A	L	S	F	P	E	V	.	.	.	.	.	P	K	R	L	I	V	V	G	G	G	V	I	G	L	E	L	G	V	V	W	H	R	L	G	A	E	V	I	V	L	E	Y	M	D	R	I	L	P	T	M	D	L	E	V	S	R	A	A	E	R	V	F	K	K	Q	G	L	T	I	R	T	G	V	R	V	T	A
Template Known Secondary structure				T	S		S	S		.	.	.	.	.		S								S													T	T								S	S	S	S	S		T	T	S																T						S
Template Predicted Secondary structure										.	.	.	.	.
Template SS confidence
		159	160	.	.	.	.	.	.						.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.
		215	.	.	.	.					220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.			.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.
Predicted Secondary structure							.	.	.	.																										.	.
Query SS confidence							.	.	.	.																										.	.
Query Sequence		I	N	G	N	E	.	.	.	.	I	T	F	K	S	G	K	V	E	H	Y	D	M	I	I	E	G	V	G	T	H	P	N	S	K	.	.	F	I	E	S	S	N	I	K	L	D	R	K	G	F	I	P	V	N	D	K	F	E	T	N	V	P	N	I	Y	A	I	G	D	I	A	T	S	H	Y	R	H	V	D	L
Query Conservation							.	.	.	.																										.	.
Alig confidence							.	.	.	.																										.	.																																							.	.	.	.	.	.
Template Conservation																																																																												.	.	.	.	.	.
Template Sequence		V	V	P	E	A	K	G	A	R	V	E	L	E	G	G	E	V	L	E	A	D	R	V	L	V	A	V	G	R	R	P	Y	T	E	G	L	S	L	E	N	A	G	L	S	T	D	E	R	G	R	I	P	V	D	E	H	L	R	T	R	V	P	H	I	Y	A	I	G	D	V	V	R	G	P	.	.	.	.	.	.
Template Known Secondary structure						T	T							T	T	S						S						S							T	T			G	G	G	G	T					T	T	S						T	T	S	B		S	S	T	T					G	G	G	S	S	S		.	.	.	.	.	.
Template Predicted Secondary structure																																																																												.	.	.	.	.	.
Template SS confidence
		234	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.
		289	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.				.	.	.	.
Predicted Secondary structure																																																																											.	.	.
Query SS confidence																																																																											.	.	.
Query Sequence		P	A	S	V	P	L	A	W	G	A	H	R	A	A	S	I	V	A	E	Q	I	A	G	N	D	T	I	E	F	K	G	F	L	G	N	N	I	V	K	F	F	D	Y	T	F	A	S	V	G	V	K	P	N	E	L	K	Q	F	D	Y	K	M	V	E	V	T	Q	G	A	H	A	N	Y	.	.	.	Y	P	G	N
Query Conservation																																																																											.	.	.
Alig confidence		.	.	.	.																								.	.																																													.	.	.
Template Conservation		.	.	.	.																								.	.
Template Sequence		.	.	.	.	M	L	A	H	K	A	S	E	E	G	I	A	A	V	E	H	M	V	R	G	F	G	H	.	.	V	D	Y	Q	A	I	P	S	V	V	Y	T	H	P	E	I	A	A	V	G	Y	T	E	E	E	L	K	A	Q	G	I	P	Y	K	V	G	K	F	P	Y	S	A	S	G	R	A	R	A	M	G	E
Template Known Secondary structure		.	.	.	.																				S				.	.			G	G	G							S	S	S															T	T										G	G	G								T
Template Predicted Secondary structure		.	.	.	.																								.	.
Template SS confidence
						308	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330			.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.
		366	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	P	L	H	L	R	V	Y	Y	D	T	S	N	R	Q	I	L	R	A	A	A	V	G	K	E	G	A	D	K	R	I	D	V	L	S	M	A	M	M	N	Q	L	T	V	D	E	L	T	E	F	E	V	A	Y	A	P	P	Y	S	H	P	K	D	L	I	N	M	I	G	Y	K	A
Query Conservation
Alig confidence																											.																												.								.	.	.
Template Conservation																											.																												.								.	.	.
Template Sequence		T	E	G	F	I	K	V	L	A	H	A	K	T	D	R	I	L	G	V	H	G	I	G	A	R	.	V	G	D	V	L	A	E	A	A	L	A	L	F	F	K	A	S	A	E	D	L	G	R	A	P	H	A	.	H	P	S	L	S	E	I	.	.	.	L	K	E	A	A	L	A	A
Template Known Secondary structure												T	T	T		B									T	T	.														T	T		B							S				.	T	T		T				.	.	.
Template Predicted Secondary structure																											.																												.								.	.	.
Template SS confidence
		382	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.		.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.		.	.	.	.	.	.	440				.	.	.	.	.	.	.	.