Phyre 2 alignment of O52582 with c1vqwB

Job Description O52582
Confidence 99.86% Date Tue Jul 17 17:05:03 BST 2012

Rank 106 Aligned Residues 298

% Identity 17% Template c1vqwB_

PDB info PDB header:structural genomics, unknown function Chain: B: PDB Molecule:protein with similarity to flavin-containing PDBTitle: crystal structure of a protein with similarity to flavin-2 containing monooxygenases and to mammalian dimethylalanine3 monooxygenases

Resolution 2.40 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.
Predicted Secondary structure																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence	P	K	I	V	V	V	G	A	V	A	G	G	A	T	C	A	S	Q	I	R	R	L	D	K	E	S	D	I	I	I	F	E	K	D	R	D	M	S	F	A	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence	R	K	I	A	I	I	G	A	G	P	S	G	L	V	T	A	K	A	L	L	A	E	K	A	F	D	Q	V	T	L	F	E	R	R	G	S	P	G	G	V	W	N	Y	T	S	T	L	S	N	K	L	P	V	P	S	T	N	P	I	L	T	T	E	P	I	V	G	P	A	A	L	P	V	Y	P	S	P	L	Y	R
Template Known Secondary structure									S												T	T	S			S							S	S	S	S	S	S	G	G	G	S			S				S				S	S	B			T	T						B			S	S	S			B							T
Template Predicted Secondary structure
Template SS confidence
	7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.

														43	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.				.	.	.	.
Predicted Secondary structure	.	.	.	.	.	.	.	.	.	.	.	.	.																																																													.	.	.
Query SS confidence	.	.	.	.	.	.	.	.	.	.	.	.	.																																																													.	.	.
Query Sequence	.	.	.	.	.	.	.	.	.	.	.	.	.	C	A	L	P	Y	V	I	G	E	V	V	E	D	R	R	Y	A	L	A	Y	T	P	E	K	F	Y	D	R	K	Q	I	T	V	K	T	Y	H	E	V	I	A	I	N	D	E	R	Q	T	V	S	V	L	N	R	K	T	N	E	Q	F	.	.	.	E	E	S	Y
Query Conservation	.	.	.	.	.	.	.	.	.	.	.	.	.																																																													.	.	.
Alig confidence	.	.	.	.	.	.	.	.	.	.	.	.	.																																																													.	.	.
Template Conservation
Template Sequence	D	L	Q	T	N	T	P	I	E	L	X	G	Y	C	D	Q	S	F	K	P	Q	T	L	Q	F	P	H	R	H	T	I	Q	E	Y	Q	R	I	Y	A	Q	P	L	L	P	F	I	K	L	A	T	D	V	L	D	I	E	K	K	D	G	S	W	V	V	T	Y	K	G	T	K	A	G	S	P	I	S	K	D	I	F
Template Known Secondary structure	T		B		S	S		T	T	T	S	S		T	T	S				T	T			S	S		B													G	G	G	G	G	G				S										T	T									S	S	T	T
Template Predicted Secondary structure
Template SS confidence
	87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.

	107	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.					.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.
Predicted Secondary structure																										.	.	.	.
Query SS confidence																										.	.	.	.
Query Sequence	D	K	L	I	L	S	P	G	A	S	A	N	S	L	G	F	E	S	D	I	T	F	T	L	R	.	.	.	.	N	L	E	D	T	D	A	I	D	Q	F	I	K	A	N	Q	V	D	K	V	L	V	V	G	A	G	Y	V	S	L	E	V	L	E	N	L	N	E	R	G	L	H	P	T	L	I	H	R	S	D	K
Query Conservation																										.	.	.	.
Alig confidence																										.	.	.	.
Template Conservation
Template Sequence	D	A	V	S	I	C	N	G	H	Y	E	V	P	Y	I	P	N	I	K	G	L	D	E	Y	A	K	A	V	P	G	S	V	L	H	S	S	L	F	R	E	P	E	L	F	V	G	E	S	V	L	V	V	G	G	A	S	S	A	N	D	L	V	R	H	L	T	P	V	A	K	H	P	I	Y	Q	S	L	L	G	G
Template Known Secondary structure	S								S	S	S	S	B		B				B	T								S	T	T	S				G	G	G				G	G	G	G	T	T									S											T	T	T	S		S	S						T	T
Template Predicted Secondary structure
Template SS confidence
	167	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.

	183	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.		230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.
Predicted Secondary structure																																																.
Query SS confidence																																																.
Query Sequence	I	N	K	L	M	D	A	D	M	N	Q	P	I	L	D	E	L	D	K	R	E	I	P	Y	R	L	N	E	E	I	N	A	I	N	G	N	E	I	T	F	K	S	G	K	V	E	H	.	Y	D	M	I	I	E	G	V	G	T	H	P	N	S	K	F	I	E	S	S	N	I	K	L	D	R	K	G	F	I	P	V
Query Conservation																																																.
Alig confidence					.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.
Template Conservation					.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	G	D	I	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	E	S	L	Q	Q	V	P	E	I	T	K	F	D	P	T	T	R	E	I	Y	L	K	G	G	K	V	L	S	N	I	D	R	V	I	Y	C	T	G	Y	L	Y	S	V	P	F	P	S	L	A	K	L	K	S	P	E	T	K	L	I	D	D
Template Known Secondary structure		S		B	.	.	.	.	.	.	.	.	.	.	.	.	.	.		S	S												T	T	T	T					T	T	S							S								B											S			S	T	T	T				S	S
Template Predicted Secondary structure					.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
	247	.	.	250															.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.

	262	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	N	D	K	F	E	T	N	V	P	N	I	Y	A	I	G	D	I	A	T	S	H	Y	R	H	V	D	L	P	A	S	V	P	L	A	W	G	A	H	R	A	A	S	I	V	A	E	Q	I	A	G	N	D	T	I	E
Query Conservation
Alig confidence																	.	.	.
Template Conservation																	.	.	.
Template Sequence	G	S	H	V	H	N	V	Y	Q	H	I	F	Y	I	P	D	.	.	.	P	T	L	A	F	V	G	L	A	L	H	V	V	P	F	P	T	S	Q	A	Q	A	A	F	L	A	R	V	W	S	G	R	L	K	L	P
Template Known Secondary structure	S	S				S			T	T	T			T	T		.	.	.	T	T					S			B	S	S																		T	T	S	S
Template Predicted Secondary structure																	.	.	.
Template SS confidence
	313	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.				.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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