Job Description O52582 Confidence 99.96% Date Tue Jul 17 17:05:03 BST 2012 Rank 64 Aligned Residues 291 % Identity 17% Template c1vdcA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:nadph dependent thioredoxin reductase; PDBTitle: structure of nadph dependent thioredoxin reductase Resolution 2.50 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.								.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.
Predicted Secondary structure																																												.	.	.	.	.	.	.
Query SS confidence																																												.	.	.	.	.	.	.
Query Sequence		P	K	I	V	V	V	G	A	V	A	G	G	A	T	C	A	S	Q	I	R	R	L	D	K	E	S	D	I	I	I	F	E	K	D	R	D	M	S	F	A	N	C	.	.	.	.	.	.	.	A	L	P	Y	V	I	G	E	V	V	E	D	R	R	Y	A	L	A	Y	T	P	E	K	F	Y	D	R	K	Q	I	T
Query Conservation																																												.	.	.	.	.	.	.
Alig confidence																								.	.																			.	.	.	.	.	.	.
Template Conservation																								.	.
Template Sequence		T	R	L	C	I	V	G	S	G	P	A	A	H	T	A	A	I	Y	A	A	R	A	.	.	E	L	K	P	L	L	F	E	G	W	M	A	N	D	I	A	P	G	G	Q	L	T	T	T	T	D	V	E	N	F	P	G	F	P	E	G	I	L	G	V	E	L	T	D	K	F	R	K	Q	S	E	R	F	G	T	T
Template Known Secondary structure										S													T	.	.	T									S	S	B	T	T	B		T	T		G	G	G	G		S					S	T	T		T	T																		T	T
Template Predicted Secondary structure																								.	.
Template SS confidence
		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.			.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
		75	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	K	T	Y	H	E	V	I	A	I	N	D	E	R	Q	T	V	S	V	L	N	R	K	T	N	E	Q	F	E	E	S	Y	D	K	L	I	L	S	P	G	A	S	A	N	S	L	G	F	E	S	D	I	T	F	T	L	R	N	L	E	D	T	D	A	I	D	Q	F	I	K	A	N	Q	V	D	K	V	L	V	V
Query Conservation
Alig confidence						.
Template Conservation						.
Template Sequence		I	F	T	E	.	T	V	T	K	V	D	F	S	S	K	P	F	K	L	F	T	D	S	K	A	I	L	A	D	A	V	I	L	A	I	G	A	V	A	K	R	L	S	F	V	G	S	G	E	V	L	G	G	F	W	N	R	G	I	S	A	C	A	V	C	D	G	A	A	P	I	F	R	N	K	P	L	A	V	I
Template Known Secondary structure						.								S	S	S	S						S	S																						B	T		S	S	S	S	S			B	T	T	T			S						T	T	S	G	G	G	T	T	S
Template Predicted Secondary structure						.
Template SS confidence
		79	80	.	.		.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
		155	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.													.	220	.	.
Predicted Secondary structure																																																																		.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																																		.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		G	A	G	Y	V	S	L	E	V	L	E	N	L	N	E	R	G	L	H	P	T	L	I	H	R	S	D	K	I	N	K	L	M	D	A	D	M	N	Q	P	I	L	D	E	L	D	K	R	E	I	P	Y	R	L	N	E	E	I	N	A	I	N	G	N	.	.	.	.	.	.	.	.	.	.	.	.	E	I	T	F
Query Conservation																																																																		.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																			.	.	.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																			.	.	.	.	.
Template Sequence		G	G	G	D	S	A	M	E	E	A	N	F	L	T	K	Y	G	S	K	V	Y	I	I	H	R	R	D	A	F	R	A	S	K	.	.	.	.	.	I	M	Q	Q	R	A	L	S	N	P	K	I	D	V	I	W	N	S	S	V	V	E	A	Y	G	D	G	E	R	D	V	L	G	G	L	K	V	K	N	V	V	T
Template Known Secondary structure				S											T	T	T	S	S							S	S	S	S			S			.	.	.	.	.								T		T	T						S									S	S	S	S	S	S									T	T	T
Template Predicted Secondary structure																																			.	.	.	.	.
Template SS confidence
		152	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.						.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.
		223	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.		.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.
Predicted Secondary structure																																											.
Query SS confidence																																											.
Query Sequence		K	S	G	K	V	E	H	Y	D	M	I	I	E	G	V	G	T	H	P	N	S	K	F	I	E	S	S	N	I	K	L	D	R	K	G	F	I	P	V	N	D	.	K	F	E	T	N	V	P	N	I	Y	A	I	G	D	I	A	T	S	H	Y	R	H	V	D	L	P	A	S	V	P	L	A	W	G	A	H	R	A
Query Conservation																																											.
Alig confidence																											.																.																				.	.	.	.	.	.	.	.	.
Template Conservation																											.																																				.	.	.	.	.	.	.	.	.
Template Sequence		G	D	V	S	D	L	K	V	S	G	L	F	F	A	I	G	H	E	P	A	T	K	F	L	D	.	G	G	V	E	L	D	S	D	G	Y	V	V	T	K	P	G	T	T	Q	T	S	V	P	G	V	F	A	A	G	D	V	Q	D	K	K	.	.	.	.	.	.	.	.	.	Y	R	Q	A	I	T	A	A	G	T
Template Known Secondary structure										S						S					S		G	G	G	T	.	T	S	S		B		T	T	S		B				T	T	S		B		S	S	T	T					G	G	G	G		S	S	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																											.																																				.	.	.	.	.	.	.	.	.
Template SS confidence
		229	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.		.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.										.	290	.	.	.	.	.	.	.	.
		302	.	.	.	.	.	.	.	310
Predicted Secondary structure
Query SS confidence
Query Sequence		A	S	I	V	A	E	Q	I	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	C	M	A	A	L	D	A	E
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		302	.	.	.	.	.	.	.	310

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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