Job Description O52582 Confidence 100.00% Date Tue Jul 17 17:05:03 BST 2012 Rank 28 Aligned Residues 407 % Identity 21% Template c1lpfB_ PDB info PDB header:oxidoreductase Chain: B: PDB Molecule:dihydrolipoamide dehydrogenase; PDBTitle: three-dimensional structure of lipoamide dehydrogenase from2 pseudomonas fluorescens at 2.8 angstroms resolution.3 analysis of redox and thermostability properties Resolution 2.80 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.
Predicted Secondary structure																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		K	I	V	V	V	G	A	V	A	G	G	A	T	C	A	S	Q	I	R	R	L	D	K	E	S	D	I	I	I	F	E	K	D	R	D	M	S	F	A	N	C	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																							.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																							.	.
Template Sequence		D	V	V	V	I	G	A	G	P	G	G	Y	V	A	A	I	R	A	A	Q	L	.	.	G	L	K	T	A	C	I	E	K	Y	I	G	K	E	G	K	V	A	L	G	G	T	C	L	N	V	G	C	I	P	S	K	A	L	L	D	S	S	Y	K	Y	H	E	A	K	E	A	F	K	V	H	G	I	E	A	K	G
Template Known Secondary structure									S														.	.	T										B		S	S	S	S	B		T	T							S																				T	S	G	G	G	T				S	S
Template Predicted Secondary structure																							.	.
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.			.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
					45	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.
Predicted Secondary structure		.	.	.
Query SS confidence		.	.	.
Query Sequence		.	.	.	L	P	Y	V	I	G	E	V	V	E	D	R	R	Y	A	L	A	Y	T	P	E	K	F	Y	D	R	K	Q	I	T	V	K	T	Y	H	E	V	I	A	I	N	D	E	R	Q	T	V	S	V	L	N	R	K	T	N	E	Q	F	E	E	S	Y	D	K	L	I	L	S	P	G	A	S	A	N	S	L	G
Query Conservation		.	.	.
Alig confidence		.	.	.																																.	.	.	.
Template Conservation																																				.	.	.	.
Template Sequence		V	T	I	D	V	P	A	M	V	A	R	K	A	N	I	V	K	N	L	T	G	G	I	A	T	L	F	K	A	N	G	V	T	S	.	.	.	.	F	E	G	H	G	K	L	L	A	N	K	Q	V	E	V	T	G	L	D	G	K	T	Q	V	L	E	A	E	N	V	I	I	A	S	G	S	R	P	V	E	I	P
Template Known Secondary structure																																T				.	.	.	.									G	G	G							T	T	S																					B	T
Template Predicted Secondary structure																																				.	.	.	.
Template SS confidence
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.					.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
		122	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	E	S	D	I	T	F	T	L	R	N	L	E	D	T	D	A	I	D	Q	F	I	K	A	N	Q	V	D	K	V	L	V	V	G	A	G	Y	V	S	L	E	V	L	E	N	L	N	E	R	G	L	H	P	T	L	I	H	R	S	D	K	I	N	K	L	M	D	A	D	M	N	Q	P	I	L	D	E	L	D	K
Query Conservation
Alig confidence																							.	.	.	.	.
Template Conservation																							.	.	.	.	.
Template Sequence		P	A	P	L	S	D	D	I	I	V	D	S	T	G	A	L	E	F	Q	A	V	.	.	.	.	.	P	K	K	L	G	V	I	G	A	G	V	I	G	L	E	L	G	S	V	W	A	R	L	G	A	E	V	T	V	L	E	A	L	D	K	F	L	P	A	A	D	E	Q	I	A	K	E	A	L	K	V	L	T	K
Template Known Secondary structure		T	B				T	T	T								T	T		S	S		.	.	.	.	.		S								S													T	T								S	S	S	S	S	S	T	T	S
Template Predicted Secondary structure																							.	.	.	.	.
Template SS confidence
		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.						180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.
		202	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.								220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.			.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.
Predicted Secondary structure																				.	.	.	.	.	.	.																										.	.
Query SS confidence																				.	.	.	.	.	.	.																										.	.
Query Sequence		R	E	I	P	Y	R	L	N	E	E	I	N	A	I	N	G	N	E	.	.	.	.	.	.	.	I	T	F	K	S	G	K	V	E	H	Y	D	M	I	I	E	G	V	G	T	H	P	N	S	K	.	.	F	I	E	S	S	N	I	K	L	D	R	K	G	F	I	P	V	N	D	K	F	E	T	N	V	P	N	I
Query Conservation																				.	.	.	.	.	.	.																										.	.
Alig confidence																				.	.	.	.	.	.	.																										.	.
Template Conservation
Template Sequence		Q	G	L	N	I	R	L	G	A	R	V	T	A	S	E	V	K	K	K	Q	V	T	V	T	F	T	D	A	N	G	E	Q	K	E	T	F	D	K	L	I	V	A	V	G	R	R	P	V	T	T	D	L	L	A	A	D	S	G	V	T	L	D	E	R	G	F	I	Y	V	D	D	H	C	K	T	S	V	P	G	V
Template Known Secondary structure		T	T					T	T										T	T									S	S								S	S					S							T	T	T	B		T	T	S				B		T	T	S		B				T	T		B		S	S	T	T
Template Predicted Secondary structure
Template SS confidence
		234	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.
		273	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	A	I	G	D	I	A	T	S	H	Y	R	H	V	D	L	P	A	S	V	P	L	A	W	G	A	H	R	A	A	S	I	V	A	E	Q	I	A	G	N	D	T	I	E	F	K	G	F	L	G	N	N	I	V	K	F	F	D	Y	T	F	A	S	V	G	V	K	P	N	E	L	K	Q	F	D	Y	K	M	V	E
Query Conservation
Alig confidence											.	.	.	.	.	.	.	.	.	.																							.											.
Template Conservation											.	.	.	.	.	.	.	.	.	.																							.											.
Template Sequence		F	A	I	G	D	V	V	R	G	.	.	.	.	.	.	.	.	.	.	A	M	L	A	H	K	A	S	E	E	G	V	M	V	A	E	R	I	A	G	H	K	.	A	Q	M	N	Y	D	L	I	P	S	.	V	I	Y	T	H	P	E	I	A	W	V	G	K	T	E	Q	T	L	K	A	E	G	V	E	V	N	V
Template Known Secondary structure					G	G	G	S	S	S	.	.	.	.	.	.	.	.	.	.																			T	T			.					G	G	G				.				S	S	S															T	T
Template Predicted Secondary structure											.	.	.	.	.	.	.	.	.	.																							.											.
Template SS confidence
		314	.	.	.	.	.	320	.	.											.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.		.	.	.	.	.	350	.	.	.	.		.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.
		353	.	.	.	.	.	.	360	.				.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.
Predicted Secondary structure											.	.	.
Query SS confidence											.	.	.
Query Sequence		V	T	Q	G	A	H	A	N	Y	.	.	.	Y	P	G	N	S	P	L	H	L	R	V	Y	Y	D	T	S	N	R	Q	I	L	R	A	A	A	V	G	K	E	G	A	D	K	R	I	D	V	L	S	M	A	M	M	N	Q	L	T	V	D	E	L	T	E	F	E	V	A	Y	A	P	P	Y	S	H	P	K	D	L
Query Conservation											.	.	.
Alig confidence											.	.	.																														.																												.								.	.	.
Template Conservation																																											.																												.								.	.	.
Template Sequence		G	T	F	P	F	A	A	S	G	R	A	M	A	A	N	D	T	T	G	L	V	K	V	I	A	D	A	K	T	D	R	V	L	G	V	H	V	I	G	P	S	.	A	A	E	L	V	Q	Q	G	A	I	G	M	E	F	G	T	S	A	E	D	L	G	M	M	V	F	S	.	H	P	T	L	S	E	A	.	.	.
Template Known Secondary structure						G	G	G								T												S	S	S		B									T	T	.														T	T		B						T	S				.	S	S		T				.	.	.
Template Predicted Secondary structure																																											.																												.								.	.	.
Template SS confidence
		382	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.		.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.		450	.	.	.	.	.	.
		430	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	N	M	I	G	Y	K	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	H	E	A	A	L	A	V
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		457	.	.	460	.	.	.	.