Job Description O52582 Confidence 100.00% Date Tue Jul 17 17:05:03 BST 2012 Rank 30 Aligned Residues 417 % Identity 20% Template c1ebdB_ PDB info PDB header:complex (oxidoreductase/transferase) Chain: B: PDB Molecule:dihydrolipoamide dehydrogenase; PDBTitle: dihydrolipoamide dehydrogenase complexed with the binding2 domain of the dihydrolipoamide acetylase Resolution 2.60 Å

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		1	.		.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.																							.	.	.	.	.	.	.	50	.	.	.	.	.	.	.
Predicted Secondary structure				.																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence				.																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		M	P	.	K	I	V	V	V	G	A	V	A	G	G	A	T	C	A	S	Q	I	R	R	L	D	K	E	S	D	I	I	I	F	E	K	D	R	D	M	S	F	A	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	C	A	L	P	Y	V	I	G	E	V	V	E	D	R	R
Query Conservation				.																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence				.																						.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																										.	.
Template Sequence		I	E	T	E	T	L	V	V	G	A	G	P	G	G	Y	V	A	A	I	R	A	A	Q	L	.	.	G	Q	K	V	T	I	V	E	K	G	N	L	G	G	V	C	L	N	V	G	C	I	P	S	K	A	L	I	S	A	S	H	R	Y	E	Q	A	K	H	S	E	E	M	G	I	K	A	E	N	V	T	I	D	F
Template Known Secondary structure					S							S													T	.	.	T								S	S		T	T							S																			T		G	G	G	T					S
Template Predicted Secondary structure																										.	.
Template SS confidence
		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.			.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
		58	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	A	L	A	Y	T	P	E	K	F	Y	D	R	K	Q	I	T	V	K	T	Y	H	E	V	I	A	I	N	D	E	R	Q	T	V	S	V	L	N	R	K	T	N	E	Q	F	E	E	S	Y	D	K	L	I	L	S	P	G	A	S	A	N	S	L	G	F	E	S	D	I	T	F	T	L	R	N	L	E	D	T	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	K	V	Q	E	W	K	A	S	V	V	K	K	L	T	G	G	V	E	G	L	L	K	G	N	K	V	E	I	V	K	G	E	A	Y	F	V	D	A	N	T	V	R	V	V	N	G	D	S	A	Q	T	Y	T	F	K	N	A	I	I	A	T	G	S	R	P	I	E	L	P	N	F	K	F	S	N	R	I	L	D
Template Known Secondary structure																										T	T						S							T	T							T	T								S														T	T				S	S	S
Template Predicted Secondary structure
Template SS confidence
		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.
		138	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	I	D	Q	F	I	K	A	N	Q	V	D	K	V	L	V	V	G	A	G	Y	V	S	L	E	V	L	E	N	L	N	E	R	G	L	H	P	T	L	I	H	R	S	D	K	I	N	K	L	M	D	A	D	M	N	Q	P	I	L	D	E	L	D	K	R	E	I	P	Y	R	L	N	E	E	I	N	A	I	N	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		S	T	G	A	L	N	L	G	E	V	P	K	S	L	V	V	I	G	G	G	Y	I	G	I	E	L	G	T	A	Y	A	N	F	G	T	K	V	T	I	L	E	G	A	G	E	I	L	S	G	F	E	K	Q	M	A	A	I	I	K	K	R	L	K	K	K	G	V	E	V	V	T	N	A	L	A	K	G	A	E	E
Template Known Secondary structure							T		S	S			S								S														T								S	S	S	S	S	S	T	T	S															T	T						S
Template Predicted Secondary structure
Template SS confidence
		166	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.
		218	.								220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.			.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.
Predicted Secondary structure				.	.	.	.	.	.	.																													.	.
Query SS confidence				.	.	.	.	.	.	.																													.	.
Query Sequence		N	E	.	.	.	.	.	.	.	I	T	F	K	S	G	K	V	E	H	Y	D	M	I	I	E	G	V	G	T	H	P	N	S	K	F	I	E	.	.	S	S	N	I	K	L	D	R	K	G	F	I	P	V	N	D	K	F	E	T	N	V	P	N	I	Y	A	I	G	D	I	A	T	S	H	Y	R	H	V	D	L
Query Conservation				.	.	.	.	.	.	.																													.	.
Alig confidence				.	.	.	.	.	.	.																													.	.																																				.	.	.	.	.	.
Template Conservation																																																																												.	.	.	.	.	.
Template Sequence		R	E	D	G	V	T	V	T	Y	E	A	N	G	E	T	K	T	I	D	A	D	Y	V	L	V	T	V	G	R	R	P	N	T	D	E	L	G	L	E	Q	I	G	I	K	M	T	N	R	G	L	I	E	V	D	Q	Q	C	R	T	S	V	P	N	I	F	A	I	G	D	I	V	P	G	P	.	.	.	.	.	.
Template Known Secondary structure			S	S	S								T	T								S						S					S		T	T	S	S					T			B		T	T	S		B				T	T		B		S	S	T	T					G	G	G	S	S	S		.	.	.	.	.	.
Template Predicted Secondary structure																																																																												.	.	.	.	.	.
Template SS confidence
		246	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.
		289	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.				.	.	.
Predicted Secondary structure																																																																												.	.	.
Query SS confidence																																																																												.	.	.
Query Sequence		P	A	S	V	P	L	A	W	G	A	H	R	A	A	S	I	V	A	E	Q	I	A	G	N	D	T	I	E	F	K	G	F	L	G	N	N	I	V	K	F	F	D	Y	T	F	A	S	V	G	V	K	P	N	E	L	K	Q	F	D	Y	K	M	V	E	V	T	Q	G	A	H	A	N	Y	Y	.	.	.	P	G	N
Query Conservation																																																																												.	.	.
Alig confidence		.	.	.	.																								.	.																																														.	.	.
Template Conservation		.	.	.	.																								.	.
Template Sequence		.	.	.	.	A	L	A	H	K	A	S	Y	E	G	K	V	A	A	E	A	I	A	G	H	P	S	A	.	.	V	D	Y	V	A	I	P	A	V	V	F	S	D	P	E	C	A	S	V	G	Y	F	E	Q	Q	A	K	D	E	G	I	D	V	I	A	A	K	F	P	F	A	A	N	G	R	A	L	A	L	N	D
Template Known Secondary structure		.	.	.	.																			T					.	.				S								S	S	S															T	T										T	T	T								T
Template Predicted Secondary structure		.	.	.	.																								.	.
Template SS confidence
						320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.			.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.
		366	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.		.	.	430	.	.	.
Predicted Secondary structure																																																																.
Query SS confidence																																																																.
Query Sequence		S	P	L	H	L	R	V	Y	Y	D	T	S	N	R	Q	I	L	R	A	A	A	V	G	K	E	G	A	D	K	R	I	D	V	L	S	M	A	M	M	N	Q	L	T	V	D	E	L	T	E	F	E	V	A	Y	A	P	P	Y	S	H	P	K	.	D	L	I	N	M	I
Query Conservation																																																																.
Alig confidence																											.																												.									.
Template Conservation																											.																												.
Template Sequence		T	D	G	F	L	K	L	V	V	R	K	E	D	G	V	I	I	G	A	Q	I	I	G	P	N	.	A	S	D	M	I	A	E	L	G	L	A	I	E	A	G	M	T	A	E	D	I	A	L	T	I	H	A	.	H	P	T	L	G	E	I	A	M	E	A	A	E	V	A
Template Known Secondary structure												T	T	T	T									S	T	T	.															T		B						T	S				.	T	T		S	T	T
Template Predicted Secondary structure																											.																												.
Template SS confidence
		394	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.		.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.		.	.	.	.	450	.	.	.	.	.	.	.	.	.	460