Phyre 2 alignment of P0A0B9 with c2varB

Job Description P0A0B9
Confidence 100.00% Date Tue Jul 17 17:05:05 BST 2012

Rank 30 Aligned Residues 295

% Identity 15% Template c2varB_

PDB info PDB header:transferase Chain: B: PDB Molecule:fructokinase; PDBTitle: crystal structure of sulfolobus solfataricus 2-keto-3-2 deoxygluconate kinase complexed with 2-keto-3-3 deoxygluconate

Resolution 2.10 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																													.
Query SS confidence																																																													.
Query Sequence	M	I	L	T	L	T	L	N	P	S	V	D	I	S	Y	P	L	T	A	L	K	L	D	D	V	N	R	V	Q	E	V	S	K	T	A	G	G	K	G	L	N	V	T	R	V	L	A	Q	V	G	E	P	V	L	A	S	G	F	I	G	.	G	E	L	G	Q	F	I	A	K	K	L	D	H	A	D	I	K	H	A
Query Conservation																																																													.
Alig confidence															.	.	.	.																																											.
Template Conservation															.	.	.	.
Template Sequence	V	D	V	I	A	L	G	E	P	L	I	Q	F	N	.	.	.	.	S	F	N	P	G	P	L	R	F	V	N	Y	F	E	K	H	V	A	G	S	E	L	N	F	C	I	A	V	V	R	N	H	L	S	C	S	L	I	A	R	V	G	N	D	E	F	G	K	N	I	I	E	Y	S	R	A	Q	G	I	D	T	S
Template Known Secondary structure															.	.	.	.		S	S	S	S		G	G	G																						T	T											S	S													T	T		B		T
Template Predicted Secondary structure															.	.	.	.
Template SS confidence
	2	.	.	.	.	.	.	.	10	.	.	.	.	.					.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.

	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.					100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.			.	.	.	.	.	.	.	.	150	.	.	.
Predicted Secondary structure																					.	.	.	.																																											.	.
Query SS confidence																					.	.	.	.																																											.	.
Query Sequence	F	Y	N	I	K	G	E	T	R	N	C	I	A	I	L	H	E	G	Q	Q	.	.	.	.	T	E	I	L	E	Q	G	P	E	I	D	N	Q	E	A	A	G	F	I	K	H	F	E	Q	L	L	E	K	V	E	A	V	A	I	S	G	S	L	P	K	G	L	.	.	N	Q	D	Y	Y	A	Q	I	I	E	R	C
Query Conservation																					.	.	.	.																																											.	.
Alig confidence																					.	.	.	.																	.																										.	.
Template Conservation																																									.
Template Sequence	H	I	K	V	D	N	E	S	F	T	G	I	Y	F	I	Q	R	G	Y	P	I	P	M	K	S	E	L	V	Y	Y	R	K	G	S	A	G	S	R	L	S	.	P	E	D	I	N	E	N	Y	V	R	N	S	R	L	V	H	S	T	G	I	T	L	A	I	S	D	N	A	K	E	A	V	I	K	A	F	E	L	A
Template Known Secondary structure	T					T	T	S										S	S	S	S	T	T									T	T		S	G	G	G			.	G	G	G								T	S	S
Template Predicted Secondary structure																																									.
Template SS confidence
	78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.		.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.

	154	.	.	.	.	.	160	.	.	.	.	.	.						.	.	.	170	.	.	.	.	.	.	.	.	.	180			.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.
Predicted Secondary structure														.	.	.	.	.															.	.
Query SS confidence														.	.	.	.	.															.	.
Query Sequence	Q	N	K	G	V	P	V	I	L	D	C	S	G	.	.	.	.	.	A	T	L	Q	T	V	L	E	N	P	Y	K	P	T	.	.	V	I	K	P	N	I	S	E	L	Y	Q	L	L	N	Q	P	L	D	E	S	L	E	S	L	K	Q	A	V	S	Q	P	L	F	E	G	I	E	W	I	I	V	S	L	G	A	Q
Query Conservation														.	.	.	.	.															.	.
Alig confidence														.	.	.	.	.															.	.																.	.	.	.	.	.
Template Conservation																																																		.	.	.	.	.	.
Template Sequence	K	S	R	S	L	D	T	N	I	R	P	K	L	W	S	S	L	E	K	A	K	E	T	I	L	S	I	L	K	K	Y	D	I	E	V	L	I	T	D	P	D	D	T	K	I	L	L	D	V	.	.	.	.	.	.	T	D	P	D	E	A	Y	R	K	Y	K	E	L	G	V	K	V	L	L	Y	K	L	G	S	K
Template Known Secondary structure	S	S									G	G	G	S	S																S																	S		.	.	.	.	.	.													T	T									G	G	G
Template Predicted Secondary structure																																																		.	.	.	.	.	.
Template SS confidence
	157	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.							.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230

	227	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290			.	.	.	.	.	.	.	.	.	300	.	.	.	.
Predicted Secondary structure																																																																	.	.
Query SS confidence																																																																	.	.
Query Sequence	G	A	F	A	K	H	N	H	T	F	Y	R	V	N	I	P	T	I	S	V	L	N	P	V	G	S	G	D	S	T	V	A	G	I	T	S	A	I	L	N	H	E	N	D	H	D	L	L	K	K	A	N	T	L	G	M	L	N	A	Q	E	A	Q	T	.	.	G	Y	V	N	L	N	N	Y	D	D	L	F	N	Q
Query Conservation																																																																	.	.
Alig confidence																																																																	.	.
Template Conservation
Template Sequence	G	A	I	A	Y	K	D	N	V	K	A	F	K	D	A	Y	K	V	P	V	E	D	P	T	G	A	G	D	A	M	A	G	T	F	V	S	L	Y	L	Q	G	K	D	I	E	Y	S	L	A	H	G	I	A	A	S	T	L	V	I	T	V	R	G	D	N	E	L	T	P	T	L	E	D	A	E	R	F	L	N	E
Template Known Secondary structure							T	T													S			T	T															T	T																		T	T	S	S	S	S	S	T	T
Template Predicted Secondary structure
Template SS confidence
	231	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310

	305	.
Predicted Secondary structure
Query SS confidence
Query Sequence	I	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence	F	K
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
	311	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

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Lawrence Kelley, Benjamin Jefferys
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