Job Description P0A0B9 Confidence 100.00% Date Tue Jul 17 17:05:05 BST 2012 Rank 26 Aligned Residues 284 % Identity 15% Template c2c49A_ PDB info PDB header:transferase Chain: A: PDB Molecule:sugar kinase mj0406; PDBTitle: crystal structure of methanocaldococcus jannaschii2 nucleoside kinase - an archaeal member of the ribokinase3 family Resolution 1.92 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.		.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure																					.																																								.
Query SS confidence																					.																																								.
Query Sequence		L	T	L	T	L	N	P	S	V	D	I	S	Y	P	L	T	A	L	K	.	L	D	D	V	N	R	V	Q	E	V	S	K	T	A	G	G	K	G	L	N	V	T	R	V	L	A	Q	V	G	E	P	V	L	A	S	G	F	I	G	.	G	E	L	G	Q	F	I	A	K	K	L	D	H	A	D	I	K	H	A	F
Query Conservation																					.																																								.
Alig confidence																					.																																								.
Template Conservation
Template Sequence		I	T	C	V	G	H	T	A	L	D	Y	I	F	N	V	E	K	F	P	E	P	N	T	S	I	Q	I	P	S	A	R	K	Y	Y	G	G	A	A	A	N	T	A	V	G	I	K	K	L	G	V	N	S	E	L	L	S	C	V	G	Y	D	F	K	N	S	G	Y	E	R	Y	L	K	N	L	D	I	N	I	S	K
Template Known Secondary structure						S											S	S				S	S						S																				T	T											T	T	T	T	T	S									T	T		B		T	T
Template Predicted Secondary structure
Template SS confidence
		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.
		81	.	.	.	.			.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
Predicted Secondary structure							.	.
Query SS confidence							.	.
Query Sequence		Y	N	I	K	G	.	.	E	T	R	N	C	I	A	I	L	H	E	G	Q	Q	T	E	I	L	E	Q	G	P	E	I	D	N	Q	E	A	A	G	F	I	K	H	F	E	Q	L	L	E	K	V	E	A	V	A	I	S	G	S	L	P	K	G	L	N	Q	D	Y	Y	A	Q	I	I	E	R	C	Q	N	K	G	V
Query Conservation							.	.
Alig confidence							.	.																								.	.	.	.	.	.																					.	.	.	.	.
Template Conservation																																.	.	.	.	.	.																					.	.	.	.	.
Template Sequence		L	Y	Y	S	E	E	E	E	T	P	K	A	W	I	F	T	D	K	D	N	N	Q	I	T	F	F	L	W	G	A	.	.	.	.	.	.	A	K	H	Y	K	E	L	N	P	P	N	F	N	T	E	I	V	H	I	A	.	.	.	.	.	T	G	D	P	E	F	N	L	K	C	A	K	K	A	Y	G	N	N	L
Template Known Secondary structure						S	S	S											T	T										G	G	.	.	.	.	.	.	G	G	G	G	G	G															.	.	.	.	.	S														B	T	T	B
Template Predicted Secondary structure																																.	.	.	.	.	.																					.	.	.	.	.
Template SS confidence
		88	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.							.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.						.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.
		159	160	.	.	.	.				.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.
Predicted Secondary structure								.	.	.
Query SS confidence								.	.	.
Query Sequence		P	V	I	L	D	C	.	.	.	S	G	A	T	L	Q	T	V	L	E	N	P	Y	K	P	T	V	I	K	P	N	I	S	E	L	Y	Q	L	L	N	Q	P	L	D	E	S	L	E	S	L	K	Q	A	V	S	Q	P	L	F	E	G	I	E	W	I	I	V	S	L	G	A	Q	G	A	F	A	K	H	N	H	T
Query Conservation								.	.	.
Alig confidence								.	.	.																																									.	.	.	.	.	.	.	.	.
Template Conservation																																																			.	.	.	.	.	.	.	.	.
Template Sequence		V	S	F	D	P	G	Q	D	L	P	Q	Y	S	K	E	M	L	L	E	I	I	E	H	T	N	F	L	F	M	N	K	H	E	F	E	R	A	S	N	L	L	N	F	E	I	D	D	Y	L	.	.	.	.	.	.	.	.	.	E	R	V	D	A	L	I	V	T	K	G	S	K	G	S	V	I	Y	T	K	D	K
Template Known Secondary structure							G	G	G	G	G	G											T	T		S																	T								.	.	.	.	.	.	.	.	.	T	T		S							G	G	G							S	S
Template Predicted Secondary structure																																																			.	.	.	.	.	.	.	.	.
Template SS confidence
		157	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.										.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.
		236	.	.	.	240	.	.	.	.		.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290			.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.
Predicted Secondary structure											.																																															.	.
Query SS confidence											.																																															.	.
Query Sequence		F	Y	R	V	N	I	P	T	I	.	S	V	L	N	P	V	G	S	G	D	S	T	V	A	G	I	T	S	A	I	L	N	H	E	N	D	H	D	L	L	K	K	A	N	T	L	G	M	L	N	A	Q	E	A	Q	T	.	.	G	Y	V	N	L	N	N	Y	D	D	L	F	N	Q	I	E
Query Conservation											.																																															.	.
Alig confidence											.																																															.	.
Template Conservation
Template Sequence		K	I	E	I	P	C	I	K	A	G	K	V	I	D	P	T	G	A	G	D	S	Y	R	A	G	F	L	S	A	Y	V	K	G	Y	D	L	E	K	C	G	L	I	G	A	A	T	A	S	F	V	V	E	A	K	G	C	Q	T	N	L	P	T	W	D	K	V	V	E	R	L	E	K	H	R
Template Known Secondary structure											S	S					T	T															T	T																		T	T	S	S	S	S	S	T	T
Template Predicted Secondary structure
Template SS confidence
		228	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions