Job Description P60647 Confidence 2.38% Date Tue Jul 17 17:05:12 BST 2012 Rank 54 Aligned Residues 83 % Identity 16% Template c3tijA_ PDB info PDB header:membrane protein Chain: A: PDB Molecule:nupc family protein; PDBTitle: crystal structure of a concentrative nucleoside transporter from2 vibrio cholerae Resolution 2.44 Å

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		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.																60	.	.	.	.	.	.	.	.	.	70
Predicted Secondary structure																																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.
Query SS confidence																																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.
Query Sequence		I	I	K	L	L	L	Q	L	G	I	I	I	V	I	T	Y	I	G	T	E	I	Q	K	I	F	H	L	P	L	A	G	S	I	V	G	L	F	L	F	Y	L	L	L	Q	F	K	I	V	P	L	T	W	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	D	G	A	N	F	L	L	K	T	M	.
Query Conservation																																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.
Alig confidence																																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.
Template Conservation
Template Sequence		L	F	M	S	L	I	G	M	A	V	L	L	G	I	A	V	L	L	S	S	N	R	K	A	I	N	L	R	T	V	G	G	A	F	A	I	Q	F	S	L	G	A	F	I	L	Y	V	P	W	G	Q	E	L	L	R	G	F	S	D	A	V	S	N	V	I	N	Y	G	N	D	G	T	S	F	L	F	G	G	L	V
Template Known Secondary structure																					S		G	G	G																						T	S																														G	G	G	G
Template Predicted Secondary structure
Template SS confidence
		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
																							71	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	F	F	F	I	P	S	V	V	G	I	M	D	V	A	S	E	I	T
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		S	G	K	M	F	E	V	F	G	G	G	G	F	I	F	A	F	R	V	L	P	T	L	I	F	F	S	A	L	I	S	V	L	Y	Y	L	G	V	M	Q
Template Known Secondary structure		S	T							G	G	G	G							T																	T	T
Template Predicted Secondary structure
Template SS confidence
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions