Job Description P0A0Q0 Confidence 96.45% Date Tue Jul 17 17:05:07 BST 2012 Rank 154 Aligned Residues 164 % Identity 15% Template c3ketA_ PDB info PDB header:transcription/dna Chain: A: PDB Molecule:redox-sensing transcriptional repressor rex; PDBTitle: crystal structure of a rex-family transcriptional regulatory protein2 from streptococcus agalactiae bound to a palindromic operator Resolution 2.40 Å

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		9	10	.	.	.	.	.	.	.			.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.
Predicted Secondary structure											.	.
Query SS confidence											.	.
Query Sequence		E	I	A	K	L	V	N	K	K	.	.	G	T	I	R	T	N	E	I	V	E	G	L	N	V	S	D	M	T	V	R	R	D	L	I	E	L	E	N	K	G	I	L	T	K	I	H	G	G	A	R	S	N	S	T	F	Q	Y	K	E	I	S	H	K	E	K	H	T	R	Q	I	A	E	K	R	F	I	A	K	K
Query Conservation											.	.
Alig confidence											.	.																															.	.							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																											.	.							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		R	I	F	K	R	F	N	T	D	G	I	E	K	A	S	S	K	Q	I	A	D	A	L	G	I	D	S	A	T	V	R	R	D	F	S	Y	F	G	E	L	G	.	.	R	R	G	F	G	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	V	K	K	L	M	N	F	F	A	E
Template Known Secondary structure										T	T														T	S											T	T				S	.	.	B	T	T	T	B		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																											.	.							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60			.	.	.	.	.	.																					.	.	.	70	.	.	.	.	.	.	.
		87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.			.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
Predicted Secondary structure																													.	.
Query SS confidence																													.	.
Query Sequence		A	A	S	L	I	E	D	G	D	T	L	F	F	G	P	G	T	T	V	E	L	L	A	E	E	V	N	.	.	H	H	T	L	T	I	I	T	N	C	L	P	V	Y	K	I	L	L	E	K	Q	T	A	H	F	R	V	Y	L	I	G	G	E	M	R	H	I	T	E	A	F	V	G	E	M	A	N	A	M	L	E
Query Conservation																													.	.
Alig confidence																													.	.									.	.	.	.	.	.	.	.									.	.	.	.
Template Conservation																																							.	.	.	.	.	.	.	.									.	.	.	.
Template Sequence		I	L	N	D	H	S	T	T	N	V	M	L	V	G	C	G	N	I	G	R	A	L	L	H	Y	R	F	H	D	R	N	K	M	Q	I	S	M	.	.	.	.	.	.	.	.	A	F	D	L	D	S	N	D	.	.	.	.	L	V	G	K	T	T	E	D	G	I	P	V	Y	G	I	S	T	I	N	D	H	L	I
Template Known Secondary structure			T	T		S	S										S								T	S		G	G	G	T	S	S						.	.	.	.	.	.	.	.					T	T	S	T	.	.	.	.	T	T	T	S	B		T	T	S		B				G	G	G					T	S
Template Predicted Secondary structure																																							.	.	.	.	.	.	.	.									.	.	.	.
Template SS confidence
		78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.									.	.	.	.	.	120	.	.					.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.
		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	L	R	F	S	K	M	F	F	S	S	N	A	V	N	K	G	A	V	M	T	S	T	L	D	E	A	Y	T	Q	Q	L	A	L	S	N	S	I	E	K	Y	L	L	I	D	H	T	K	V	G	K	E
Query Conservation
Alig confidence													.	.	.	.	.	.	.	.	.	.
Template Conservation													.	.	.	.	.	.	.	.	.	.
Template Sequence		D	S	D	I	E	T	A	I	L	T	V	.	.	.	.	.	.	.	.	.	.	P	S	T	E	A	Q	E	V	A	D	I	L	V	K	A	G	I	K	G	I	L	S	F	S	P	V	H	L	T	L	P
Template Known Secondary structure		S	S									S	.	.	.	.	.	.	.	.	.	.		G	G	G											T	T								S	S	S
Template Predicted Secondary structure													.	.	.	.	.	.	.	.	.	.
Template SS confidence
		146	.	.	.	150	.	.	.	.	.	.											.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions