Job Description P0A0Q0 Confidence 98.23% Date Tue Jul 17 17:05:07 BST 2012 Rank 23 Aligned Residues 146 % Identity 18% Template c3ecsD_ PDB info PDB header:translation Chain: D: PDB Molecule:translation initiation factor eif-2b subunit PDBTitle: crystal structure of human eif2b alpha Resolution 2.65 Å

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		79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.		100	.	.	.	.	.	.	.	.	.	110	.	.	.			.	.	.	.	.	.	120	.								.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.
Predicted Secondary structure																							.															.	.									.	.	.	.	.	.	.
Query SS confidence																							.															.	.									.	.	.	.	.	.	.
Query Sequence		E	K	R	F	I	A	K	K	A	A	S	L	I	E	D	G	D	T	L	F	F	.	G	P	G	T	T	V	E	L	L	A	E	E	V	N	.	.	H	H	T	L	T	I	I	T	.	.	.	.	.	.	.	N	C	L	P	V	Y	K	I	L	L	E	K	Q	T	A	H	F	R	V	Y	L	I	G	G	E	M	R
Query Conservation																							.															.	.									.	.	.	.	.	.	.
Alig confidence																							.															.	.									.	.	.	.	.	.	.													.	.	.						.	.	.	.	.	.	.
Template Conservation																																																																			.	.	.						.	.	.	.	.	.	.
Template Sequence		S	R	N	K	I	A	D	L	C	H	T	F	I	K	D	G	A	T	I	L	T	H	A	Y	S	R	V	V	L	R	V	L	E	A	A	V	A	A	K	K	R	F	S	V	Y	V	T	E	S	Q	P	D	L	S	G	K	K	X	A	K	A	L	C	H	L	.	.	.	N	V	P	V	T	.	.	.	.	.	.	.
Template Known Secondary structure												T	T			T	T							S															T	T											T	T	T	T											T	T	.	.	.	T					.	.	.	.	.	.	.
Template Predicted Secondary structure																																																																			.	.	.						.	.	.	.	.	.	.
Template SS confidence
		107	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.				.	.	.	.	.
		149	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.
Predicted Secondary structure																																																																							.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																																							.	.	.	.	.	.	.	.	.	.	.
Query Sequence		H	I	T	E	A	F	V	G	E	M	A	N	A	M	L	E	K	L	R	F	S	K	M	F	F	S	S	N	A	V	N	K	G	A	V	M	T	S	T	L	D	E	A	Y	T	Q	Q	L	A	L	S	N	S	I	E	K	Y	L	L	I	D	H	T	K	V	G	K	E	D	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																																							.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.													.																																																				.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.													.
Template Sequence		.	.	.	.	.	V	V	L	D	A	A	V	G	Y	I	X	E	.	K	A	D	L	V	I	V	G	A	E	G	V	V	E	N	G	G	I	I	N	K	I	G	T	N	Q	X	A	V	C	A	K	A	Q	N	K	P	F	Y	V	V	A	E	S	F	K	F	V	R	L	F	P	L	N	Q	Q	D	V	P	D	K	F
Template Known Secondary structure		.	.	.	.	.				G	G	G					G	G	.	G		S							S				T	T	S						T	T											T	T									G	G	G	B		S				S	S	G	G	G	S
Template Predicted Secondary structure		.	.	.	.	.													.
Template SS confidence
							177	.	.	180	.	.	.	.	.	.	.	.		.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250
																218	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.			.	.	.	.	240
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	T	S	F	C	Q	L	N	E	L	T	A	V	V	M	D	Y	E	.	.	D	E	E	K	V
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.																			.	.
Template Conservation
Template Sequence		K	Y	K	A	D	G	Q	D	L	K	E	E	H	P	W	V	D	Y	T	A	P	S	L	I	T	L	L	F	T	D	L	G	V	L	T	P	S	A	V
Template Known Secondary structure			S	S					S							S						G	G	G		S					T	T					G	G	G
Template Predicted Secondary structure
Template SS confidence
		251	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions