Job Description P0A011 Confidence 94.18% Date Tue Jul 17 17:05:03 BST 2012 Rank 146 Aligned Residues 131 % Identity 12% Template c3sr7C_ PDB info PDB header:isomerase Chain: C: PDB Molecule:isopentenyl-diphosphate delta-isomerase; PDBTitle: crystal structure of s. mutans isopentenyl pyrophosphate isomerase Resolution 2.04 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		146	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	E	R	I	G	S	E	C	V	A	E	D	I	P	F	F	L	E	V	L	T	Y	D	D	N	I	P	D	N	G	S	V	E	F	A	K	V	K	P	R	K	V	N	E	A	M	K	L	F	S	E	P	R	F	N	V	D	V	L	K	V	E	V	P	V	N	M	K	Y	V	E	G	F	A	E	G	E	V	V	Y
Query Conservation
Alig confidence																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									.	.														.	.	.	.	.	.	.	.	.	.
Template Conservation																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									.	.														.	.	.	.	.	.	.	.	.	.
Template Sequence		K	K	H	L	S	D	Y	A	K	K	L	Q	L	P	F	I	L	K	E	V	G	F	G	M	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	K	T	I	Q	T	A	I	.	.	D	L	G	V	K	T	V	D	I	S	G	R	G	.	.	.	.	.	.	.	.	.	.	R	S	Y	L	N
Template Known Secondary structure													S	S								S	S				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									.	.			T									B		.	.	.	.	.	.	.	.	.	.		G	G	G	T
Template Predicted Secondary structure																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									.	.														.	.	.	.	.	.	.	.	.	.
Template SS confidence
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.																		.	.	.	.	190	.	.	.			.	.	.	.	.	.	200	.	.	.	.	.	.											.	.	.	210	.
		226	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.			.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.								.	.	.	.	.	.	.	.	290	.	.	.	.	.	.
Predicted Secondary structure																		.	.																																									.	.	.	.	.	.	.
Query SS confidence																		.	.																																									.	.	.	.	.	.	.
Query Sequence		T	K	E	E	A	A	Q	H	F	K	D	Q	D	A	A	T	.	.	H	L	P	Y	I	Y	L	S	A	G	V	S	A	E	L	F	Q	E	T	L	K	F	A	H	E	A	G	A	K	F	N	G	V	L	C	G	R	A	T	W	.	.	.	.	.	.	.	S	G	A	V	Q	V	Y	I	E	Q	G	E	D	A	A
Query Conservation																		.	.																																									.	.	.	.	.	.	.
Alig confidence																		.	.																			.	.	.	.							.	.											.	.	.	.	.	.	.
Template Conservation																																						.	.	.	.							.	.
Template Sequence		Q	W	G	Q	T	T	A	Q	V	L	L	N	A	Q	P	L	M	D	K	V	E	I	L	A	S	G	G	I	R	H	P	L	D	I	I	K	.	.	.	.	A	L	V	L	G	A	.	.	K	A	V	G	L	S	R	T	M	L	E	L	V	E	Q	H	S	V	H	E	V	I	A	I	V	N	G	W	K	E	D	L
Template Known Secondary structure		T		S		B									G	G	G	T	T	T	S						S	S			S							.	.	.	.					T		.	.	S					S								T	T	S
Template Predicted Secondary structure																																						.	.	.	.							.	.
Template SS confidence
		226	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.					.	.	.	.	.	.			.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.
		297	.	.	300	.	.	.	.	.	.	.	.	.	310	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	E	W	L	R	T	T	G	F	K	N	I	D	D	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	L	I	M	C	A	L	N	C	Q	T	I	A	E	L
Template Known Secondary structure								T	T		S	B	T	G	G	G
Template Predicted Secondary structure
Template SS confidence
		300	.	.	.	.	.	.	.	.	.	310	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions