 |
| Job Description | P0A011 | | Confidence | 57.25% | Date | Tue Jul 17 17:05:03 BST 2012 |
| Rank | 374 | Aligned Residues | 86 |
| % Identity | 7% | Template | c3qxbB_ |
| PDB info |
PDB header:isomerase | Chain: B: PDB Molecule:putative xylose isomerase; |
PDBTitle: crystal structure of a putative xylose isomerase (yp_426450.1) from2 rhodospirillum rubrum atcc 11170 at 1.90 a resolution
|
| Resolution | 1.90 Å |
|
 |
|   |   |
113 | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | |
|
|
|
|
|
|
. | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . |
| Predicted Secondary structure |   |
 |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |
|
| . | . | . | . | . | . | . |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |
|
|  |  |
| Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| Query Sequence |   |
A | K | R | L | K | E | Q | G | A | N | A | V | K | F | L | L | Y | Y | D | V | . |
. |
. |
. |
. |
. |
. |
D | D | A | E | E | I | N | I | Q | K | K | A | Y | I | E | R | I | G | S | E | C | V | A | E | D | I | P | F | F | L | E | V | L | T | Y | D | D | N | I | P | D | N | G | S | V | E | F | A | K | V | K | P | R |
| Query Conservation |   |
|
|   |
|   |
|   |
|
|
|
|
|
|
|
|
|   |   |   |   | . | . | . | . | . | . | . |
|   |   |   |
|   |   |   |   |
|   |   |   |
|   |   |
|   |
|   |
|   |   |   |
|
|
|   |
|   |
|   |
|   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |
| Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . |
|
| Template Conservation |   |
|
|   |
|   |   |
|
|
|   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |
|   |   |
|   |   |   |
|   |   |   |
|
|   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   | . | . | . | . | . | . | . | . |   |
| Template Sequence |   |
I | D | X | T | A | A | X | E | V | P | A | T | G | X | P | F | G | S | Y | S | A | A | D | A | L | N | P | A | R | R | E | E | I | Y | A | I | A | R | D | X | W | I | E | L | A | A | Y | A | K | R | Q | G | L | S | X | L | Y | V | E | P | V | P | L | A | T | E | F | P | S | S | A | . |
. |
. |
. |
. |
. |
. |
. |
A |
| Template Known Secondary structure |   |
 |  |  |  |  |  | T | T |
| S |  |  |  |  |
|
| B | B |
|
|  |  |  |  | T |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T |
|
|  |  |  |  |
|
|
| S |
| T | T | B | S | S |
| S |  | . | . | . | . | . | . | . | . |  |
| Template Predicted Secondary structure |   |
 |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|  | . | . | . | . | . | . | . | . |  |
| Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|   |   |
101 | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | |
|
|
|
|
|
|
|
. |
|   |
|   |   |
186 | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . |
| Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |
|
|
| Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| Query Sequence |   |
K | V | N | E | A | M | K | L | F | S | E | P | R | F | N | V | D | V | L | K | V | E | V |
| Query Conservation |   |
  |
|   |   |
|   |
|   |   |   |   |   |
|
|
|
|
|
|   |
|   |   |   |
| Alig confidence |   |
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
| Template Conservation |   |
  |   |   |   |   |   |   |
|   |   | . | . |   |   |   |   |   |   |
|
|   |   |   |
| Template Sequence |   |
D | A | A | R | L | X | A | D | L | D | . |
. |
G | R | T | E | I | P | V | R | L | L | V |
| Template Known Secondary structure |   |
 |  |  |  |  |  |  |  |  | T | . | . | T | T | S | S | S |
|  |  |  |  |  |
| Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  | . | . |  |
|
|
|
|
|
|  |  |  |  |
| Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|   |   |
173 | . | . | . | . | . | . | 180 | . | . | |
|
. | . | . | . | . | . | . | 190 | . | . | . |
|   |
No model constructed - rank, confidence too low
Phyre is for academic use only
| Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
| Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
|   |
|
|
|