Job Description P0A011 Confidence 93.76% Date Tue Jul 17 17:05:03 BST 2012 Rank 159 Aligned Residues 216 % Identity 13% Template c3n2xB_ PDB info PDB header:lyase Chain: B: PDB Molecule:uncharacterized protein yage; PDBTitle: crystal structure of yage, a prophage protein belonging to the2 dihydrodipicolinic acid synthase family from e. coli k12 in complex3 with pyruvate Resolution 2.20 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		48	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.															70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.
Predicted Secondary structure																								.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																								.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Q	I	E	Q	L	K	V	L	V	A	E	E	L	T	Q	Y	A	S	S	I	L	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	P	E	Y	G	L	P	A	S	D	A	R	N	K	D	C	G	L	L	L	A	Y	E	K	T	G	Y	D	V	N	A	K	G	R	L	P	D	C	L	V	E	W	S	A
Query Conservation																								.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																								.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.	.	.	.	.	.					.	.	.	.
Template Conservation																																																																			.	.	.	.	.	.					.	.	.	.
Template Sequence		D	K	P	G	T	A	A	L	I	D	D	L	I	K	A	G	V	D	G	L	F	F	L	G	S	G	G	E	F	S	Q	L	G	A	E	E	R	K	A	I	A	R	F	A	I	D	H	V	D	R	R	V	P	V	L	I	G	T	G	G	T	N	A	R	E	.	.	.	.	.	.	T	I	E	L	.	.	.	.	S
Template Known Secondary structure																T	T		S					S	S	T	T	T	T	G	G	G	S																	T	T	S	S								S	S					.	.	.	.	.	.					.	.	.	.
Template Predicted Secondary structure																																																																			.	.	.	.	.	.					.	.	.	.
Template SS confidence
		32	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.							.	.	.	100					.
		114	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	R	L	K	E	Q	G	A	N	A	V	K	F	L	L	Y	Y	D	V	D	D	A	E	E	I	N	I	Q	K	K	A	Y	I	E	R	I	G	S	E	C	V	A	E	D	I	P	F	F	L	E	V	L	T	Y	D	D	N	I	P	D	N	G	S	V	E	F	A	K	V	K	P	R	K	V	N	E	A	M	K	L
Query Conservation
Alig confidence																										.	.	.														.	.	.							.	.													.	.	.	.	.	.	.
Template Conservation																										.	.	.														.	.	.							.	.													.	.	.	.	.	.	.
Template Sequence		Q	H	A	Q	Q	A	G	A	D	G	I	V	V	I	N	P	Y	Y	W	K	V	S	E	A	.	.	.	N	L	I	R	Y	F	E	Q	V	A	D	S	V	.	.	.	T	L	P	V	M	L	.	.	Y	N	F	P	A	L	T	G	Q	D	L	T	.	.	.	.	.	.	.	P	A	L	V	K	T	L	A	D	S
Template Known Secondary structure								T		S								S	S	S						.	.	.												T		.	.	.	S	S					.	.								S	S				.	.	.	.	.	.	.
Template Predicted Secondary structure																										.	.	.														.	.	.							.	.													.	.	.	.	.	.	.
Template SS confidence
		102	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.				.	.	.	.	130	.	.	.	.	.	.	.	.				.	140	.	.	.	.			.	.	.	.	.	150	.	.	.	.	.	.								.	.	.	160	.	.	.	.	.	.
		194	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	S	E	P	R	F	N	V	D	V	L	K	V	E	V	P	V	N	M	K	Y	V	E	G	F	A	E	G	E	V	V	Y	T	K	E	E	A	A	Q	H	F	K	D	Q	D	A	A	T	H	L	P	Y	I	Y	L	S	A	G	V	S	A	E	L	F	Q	E	T	L	K	F	A	H	E	A	G	A	K	F	N	G
Query Conservation
Alig confidence		.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.													.	.
Template Conservation		.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.													.	.
Template Sequence		.	.	.	.	.	.	R	S	N	I	I	G	I	D	T	I	D	S	V	A	H	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	R	S	M	I	H	T	V	K	G	A	H	P	H	F	T	V	L	C	G	Y	.	.	.	.	.	.	D	D	H	L	F	N	T	L	L	L	G	G	.	.	D	G
Template Known Secondary structure		.	.	.	.	.	.		T	T								S					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													T	T		B				S	S	.	.	.	.	.	.	G	G	G							T	T		.	.
Template Predicted Secondary structure		.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.													.	.
Template SS confidence
								167	.	.	170	.	.	.	.	.	.	.	.	.	180	.																	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.							.	.	.	.	.	.	.	210	.	.	.	.			.	.
		274	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	L	C	G	R	A	T	W	S	G	A	V	Q	V	Y	I	E	Q	G	E	D	A	A	R	E	W	L	R	T	T	G	F	K	N	I	D	D	L	N	K	V	L	K	D	T	A	T	S	W	K	Q	R
Query Conservation
Alig confidence														.	.	.	.	.	.	.
Template Conservation														.	.	.	.	.	.	.
Template Sequence		A	I	S	A	S	G	N	F	A	P	Q	V	.	.	.	.	.	.	.	S	V	N	L	L	K	A	W	R	D	G	D	V	A	K	A	A	G	Y	H	Q	T	L	L	Q	I	P	Q	M	Y	Q	L	D
Template Known Secondary structure					G	G	G	T	T					.	.	.	.	.	.	.											T															G	G	G	G	G	G	G	S
Template Predicted Secondary structure														.	.	.	.	.	.	.
Template SS confidence
		218	.	220	.	.	.	.	.	.	.	.	.								230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions