Job Description P0A011 Confidence 90.05% Date Tue Jul 17 17:05:03 BST 2012 Rank 213 Aligned Residues 256 % Identity 12% Template c3fa4D_ PDB info PDB header:lyase Chain: D: PDB Molecule:2,3-dimethylmalate lyase; PDBTitle: crystal structure of 2,3-dimethylmalate lyase, a pep mutase/isocitrate2 lyase superfamily member, triclinic crystal form Resolution 2.18 Å

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		7	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.		.	.
Predicted Secondary structure																																																																															.
Query SS confidence																																																																															.
Query Sequence		K	I	A	S	I	E	Q	L	S	N	N	E	G	I	I	S	A	L	A	F	D	Q	R	G	A	L	K	R	M	M	A	K	H	Q	T	E	E	P	T	V	A	Q	I	E	Q	L	K	V	L	V	A	E	E	L	T	Q	Y	A	S	S	I	L	L	D	P	E	Y	G	L	P	A	S	D	A	R	N	K	.	D	C
Query Conservation																																																																															.
Alig confidence																																																		.	.	.	.	.																									.
Template Conservation																																																		.	.	.	.	.
Template Sequence		A	A	T	S	L	R	R	A	L	E	N	P	D	S	F	I	V	A	P	G	V	Y	D	G	L	S	A	R	V	A	L	S	A	G	F	D	A	L	Y	M	T	G	A	G	T	A	A	S	.	.	.	.	.	V	H	G	Q	A	D	L	G	I	C	T	L	N	D	M	R	A	N	A	E	M	I	S	N	I	S	P
Template Known Secondary structure												S	T	T										S									T	T	T		S													.	.	.	.	.		T	S	S		S	S	S																		S	T
Template Predicted Secondary structure																																																		.	.	.	.	.
Template SS confidence
		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.						.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	L	L	L	A	Y	E	K	T	G	Y	D	V	N	A	K	G	R	L	P	D	C	L	V	E	W	S	A	K	R	L	K	E	Q	G	A	N	A	V	K	F	L	L	Y	Y	D	V	D	D	A	E	E	I	N	I	Q	K	K	A	Y	I	E	R	I	G	S	E	C	V	A	E	D	I	P	F	F	L	E	V	L
Query Conservation
Alig confidence									.	.	.	.	.														.																														.
Template Conservation									.	.	.	.	.														.																														.
Template Sequence		S	T	P	V	I	A	D	.	.	.	.	.	A	D	T	G	Y	G	G	P	I	M	V	A	R	.	T	T	E	Q	Y	S	R	S	G	V	A	A	F	H	I	E	D	Q	V	Q	T	K	I	L	V	D	T	D	T	.	Y	V	T	R	I	R	A	A	V	Q	A	R	Q	R	I	G	S	D	I	V	V	I	A	R
Template Known Secondary structure		T	S						.	.	.	.	.		T	T		S	S	S							.								T	T									B						B						.																T
Template Predicted Secondary structure									.	.	.	.	.														.																														.
Template SS confidence
		81	.	.	.	.	.	.						.	.	90	.	.	.	.	.	.	.	.	.	100		.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.		130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.
		166	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	Y	D	D	N	I	P	D	N	G	S	V	E	F	A	K	V	K	P	R	K	V	N	E	A	M	K	L	F	S	E	P	R	F	N	V	D	V	L	K	V	E	V	P	V	N	M	K	Y	V	E	G	F	A	E	G	E	V	V	Y	T	K	E	E	A	A	Q	H	F	K	D	Q	D	A	A	T	H	L	P	Y
Query Conservation
Alig confidence			.	.	.	.	.	.	.	.	.	.																				.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation			.	.	.	.	.	.	.	.	.	.																				.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		T	.	.	.	.	.	.	.	.	.	.	D	S	L	Q	T	H	G	Y	E	E	S	V	A	R	L	R	A	A	R	.	.	D	A	G	A	D	V	G	F	L	E	G	I	T	S	R	E	M	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	R	Q	V	I	Q	D	L	A	G	W	P	L	L	L
Template Known Secondary structure			.	.	.	.	.	.	.	.	.	.																				.	.			T		S					T	T							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								T	T	T	S		B
Template Predicted Secondary structure			.	.	.	.	.	.	.	.	.	.																				.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		162											.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.			.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.																	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.
		246	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.										.	.	310	.	.	.	.	.
Predicted Secondary structure																																																																.	.	.	.	.	.	.	.	.
Query SS confidence																																																																.	.	.	.	.	.	.	.	.
Query Sequence		I	Y	L	S	A	G	V	S	A	E	L	F	Q	E	T	L	K	F	A	H	E	A	G	A	K	F	N	G	V	L	C	G	R	A	T	W	S	G	A	V	Q	V	Y	I	E	Q	G	E	D	A	A	R	E	W	L	R	T	T	G	F	K	N	.	.	.	.	.	.	.	.	.	I	D	D	L	N	K	V	L
Query Conservation																																																																.	.	.	.	.	.	.	.	.
Alig confidence																			.	.	.					.	.															.	.	.	.	.	.	.	.															.	.	.	.	.	.	.	.	.
Template Conservation																			.	.	.					.	.															.	.	.	.	.	.	.	.
Template Sequence		N	M	V	E	H	G	A	T	P	S	I	S	A	A	E	A	K	.	.	.	E	M	G	F	.	.	R	I	I	I	F	P	F	A	A	L	G	P	A	V	.	.	.	.	.	.	.	.	A	A	M	R	E	A	M	E	K	L	K	R	D	G	I	P	G	L	D	K	E	M	T	P	Q	M	L	F	R	V	C
Template Known Secondary structure					T	T	S	S	S										.	.	.			T		.	.	S					T	T	T	T						.	.	.	.	.	.	.	.														S	S					T	T		S								T
Template Predicted Secondary structure																			.	.	.					.	.															.	.	.	.	.	.	.	.
Template SS confidence
		214	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230				.	.	.	.			.	.	.	.	.	240	.	.	.	.	.	.	.	.									.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions