Job Description P0A011 Confidence 83.83% Date Tue Jul 17 17:05:03 BST 2012 Rank 262 Aligned Residues 211 % Identity 17% Template c3dz1A_ PDB info PDB header:lyase Chain: A: PDB Molecule:dihydrodipicolinate synthase; PDBTitle: crystal structure of dihydrodipicolinate synthase from2 rhodopseudomonas palustris at 1.87a resolution Resolution 1.87 Å

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		48	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.														.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.
Predicted Secondary structure																														.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																														.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Q	I	E	Q	L	K	V	L	V	A	E	E	L	T	Q	Y	A	S	S	I	L	L	D	P	E	Y	G	L	.	.	.	.	.	.	.	.	.	.	.	.	.	P	A	S	D	A	R	N	K	D	C	G	L	L	L	A	Y	E	K	T	G	Y	D	V	N	A	K	G	R	L	P	D	C	L	V	E	W	S	A	K
Query Conservation																														.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																														.	.	.	.	.	.	.	.	.	.	.	.	.																								.	.	.	.	.	.					.	.	.	.
Template Conservation																																																																		.	.	.	.	.	.					.	.	.	.
Template Sequence		D	D	V	S	I	D	R	L	T	D	F	Y	A	E	V	G	C	E	G	V	T	V	L	G	I	L	G	E	A	P	K	L	D	A	A	E	A	E	A	V	A	T	R	F	I	K	R	A	K	S	X	Q	V	I	V	G	V	S	A	P	G	F	A	A	.	.	.	.	.	.	X	R	R	L	.	.	.	.	A	R
Template Known Secondary structure																T	T		S					S	T	G	G	G	T	G	G	G	S																	T	T	S									S	S				.	.	.	.	.	.					.	.	.	.
Template Predicted Secondary structure																																																																		.	.	.	.	.	.					.	.	.	.
Template SS confidence
		25	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.							.	90	.	.					.	.
		115	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	L	K	E	Q	G	A	N	A	V	K	F	L	L	Y	Y	D	V	D	D	A	E	E	I	N	I	Q	K	K	A	Y	I	E	R	I	G	S	E	C	V	A	E	D	I	P	F	F	L	E	V	L	T	Y	D	D	N	I	P	D	N	G	S	V	E	F	A	K	V	K	P	R	K	V	N	E	A	M	K	L	F
Query Conservation
Alig confidence																									.	.	.	.														.								.	.													.	.	.	.	.	.	.
Template Conservation																									.	.	.	.														.								.	.													.	.	.	.	.	.	.
Template Sequence		L	S	X	D	A	G	A	A	G	V	X	I	A	P	P	P	S	L	R	T	D	E	Q	.	.	.	.	I	T	T	Y	F	R	Q	A	T	E	A	I	G	.	D	D	V	P	W	V	L	.	.	Q	D	Y	P	L	T	L	S	V	V	X	T	.	.	.	.	.	.	.	P	K	V	I	R	Q	I	V	X	D	S
Template Known Secondary structure							T		S								T	T			S				.	.	.	.														.	T	T	S					.	.													.	.	.	.	.	.	.
Template Predicted Secondary structure																									.	.	.	.														.								.	.													.	.	.	.	.	.	.
Template SS confidence
		95	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.					.	.	120	.	.	.	.	.	.	.	.	.	130		.	.	.	.	.	.	.			.	.	140	.	.	.	.	.	.	.	.	.								150	.	.	.	.	.	.	.	.	.	160
		195	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	E	P	R	F	N	V	D	V	L	K	V	E	V	P	V	N	M	K	Y	V	E	G	F	A	E	G	E	V	V	Y	T	K	E	E	A	A	Q	H	F	K	D	Q	D	A	A	T	H	L	P	Y	I	Y	L	S	A	G	V	S	A	E	L	F	Q	E	T	L	K	F	A	H	E	A	G	A	K	F	N	G	V
Query Conservation
Alig confidence			.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.												.	.
Template Conservation			.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.												.	.
Template Sequence		A	.	.	.	.	S	C	V	X	L	K	H	E	D	W	P	G	L	E	K	I	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	L	R	G	F	Q	K	D	G	S	L	R	P	L	S	I	L	C	G	N	G	G	.	.	.	.	.	L	F	L	D	F	E	X	E	R	G	A	.	.	D	G	A
Template Known Secondary structure		S	.	.	.	.	S									S	S							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									T	S	S									G	G	G	.	.	.	.	.	T	T								T		.	.
Template Predicted Secondary structure			.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.												.	.
Template SS confidence
		161					.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.																.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200						.	.	.	.	.	.	.	.	.	210	.			.	.	.
		275	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	C	G	R	A	T	W	S	G	A	V	Q	V	Y	I	E	Q	G	E	D	A	A	R	E	W	L	R	T	T	G	F	K	N	I	D	D	L	N	K	V	L	K	D
Query Conservation
Alig confidence					.								.	.	.	.	.	.	.	.
Template Conservation					.								.	.	.	.	.	.	.	.
Template Sequence		X	T	G	.	Y	C	F	P	D	X	L	.	.	.	.	.	.	.	.	V	D	V	V	K	L	S	K	A	G	Q	R	D	L	A	H	N	L	F	D	A	H	L	P
Template Known Secondary structure					.		S						.	.	.	.	.	.	.	.									T	T
Template Predicted Secondary structure					.								.	.	.	.	.	.	.	.
Template SS confidence
		215	.	.		.	.	220	.	.	.	.									.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions