Job Description P0A011 Confidence 93.58% Date Tue Jul 17 17:05:03 BST 2012 Rank 163 Aligned Residues 148 % Identity 14% Template c3b0vD_ PDB info PDB header:oxidoreductase/rna Chain: D: PDB Molecule:trna-dihydrouridine synthase; PDBTitle: trna-dihydrouridine synthase from thermus thermophilus in complex with2 trna Resolution 3.51 Å

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		113	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140								.	.	.	.	.	.	.	.	.	150	.	.	.	.	.		.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.
Predicted Secondary structure																														.	.	.	.	.	.	.																.
Query SS confidence																														.	.	.	.	.	.	.																.
Query Sequence		A	K	R	L	K	E	Q	G	A	N	A	V	K	F	L	L	Y	Y	D	V	D	D	A	E	E	I	N	I	.	.	.	.	.	.	.	Q	K	K	A	Y	I	E	R	I	G	S	E	C	V	A	.	E	D	I	P	F	F	L	E	V	L	T	Y	D	D	N	I	P	D	N	G	S	V	E	F	A	K	V	K	P
Query Conservation																														.	.	.	.	.	.	.																.
Alig confidence																		.	.											.	.	.	.	.	.	.																.												.	.	.	.	.	.	.	.	.	.
Template Conservation																		.	.																																													.	.	.	.	.	.	.	.	.	.
Template Sequence		A	R	I	G	E	A	F	G	Y	D	E	I	N	L	N	L	.	.	G	C	P	S	E	K	A	Q	E	G	G	Y	G	A	C	L	L	L	D	L	A	R	V	R	E	I	L	K	A	X	G	E	A	V	R	V	P	V	T	V	K	X	R	L	.	.	.	.	.	.	.	.	.	.	G	L	E	G	K	E	T	Y
Template Known Secondary structure								T	T		S							.	.				S							T		G	G	G	G	G	G														T	T		S	S								S	.	.	.	.	.	.	.	.	.	.		B	T	T
Template Predicted Secondary structure																		.	.																																													.	.	.	.	.	.	.	.	.	.
Template SS confidence
		76	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.			.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.											.	.	.	.	140	.	.	.
		185	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.		.	.	.	230	.	.	.	.	.	.	.	.	.	240	.		.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.
Predicted Secondary structure																																												.																.
Query SS confidence																																												.																.
Query Sequence		R	K	V	N	E	A	M	K	L	F	S	E	P	R	F	N	V	D	V	L	K	V	E	V	P	V	N	M	K	Y	V	E	G	F	A	E	G	E	V	V	Y	T	.	K	E	E	A	A	Q	H	F	K	D	Q	D	A	A	T	.	H	L	P	Y	I	Y	L	S	A	G	V	S	A	E	L	F	Q	E	T	L	K
Query Conservation																																												.																.
Alig confidence													.	.								.	.	.	.																			.																.																					.
Template Conservation													.	.								.	.	.	.																																																								.
Template Sequence		R	G	L	A	Q	S	V	E	A	X	A	.	.	E	A	G	V	K	V	F	.	.	.	.	V	V	H	A	R	S	A	L	L	A	L	S	T	K	A	N	R	E	I	P	P	L	R	H	D	W	V	H	R	L	K	G	D	F	P	Q	L	T	F	V	T	N	G	G	I	R	S	L	E	E	A	L	F	H	L	.
Template Known Secondary structure													.	.		T	T					.	.	.	.					S		B		T	T	S		T	T	G	G	G	T	S	S															T	T	S						S	S			S									.
Template Predicted Secondary structure													.	.								.	.	.	.																																																								.
Template SS confidence
		144	.	.	.	.	.	150	.	.	.	.			.	.	.	.	.	160	.					.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.
		263	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	A	H	E	A	G	A	K	F	N	G	V	L	C	G	R	A	T	W	S	G	A	V
Query Conservation
Alig confidence		.	.	.	.				.	.
Template Conservation		.	.	.	.				.	.
Template Sequence		.	.	.	.	K	R	V	.	.	D	G	V	X	L	G	R	A	V	Y	E	D	P	F
Template Known Secondary structure		.	.	.	.	T	T	S	.	.	S					S							G	G
Template Predicted Secondary structure		.	.	.	.				.	.
Template SS confidence
						217	.	.			220	.	.	.	.	.	.	.	.	.	230	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions