Job Description P0A011 Confidence 85.79% Date Tue Jul 17 17:05:03 BST 2012 Rank 247 Aligned Residues 204 % Identity 16% Template c2yxgD_ PDB info PDB header:lyase Chain: D: PDB Molecule:dihydrodipicolinate synthase; PDBTitle: crystal structure of dihyrodipicolinate synthase (dapa) Resolution 2.20 Å

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		48	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.															70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.
Predicted Secondary structure																								.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																								.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Q	I	E	Q	L	K	V	L	V	A	E	E	L	T	Q	Y	A	S	S	I	L	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	P	E	Y	G	L	P	A	S	D	A	R	N	K	D	C	G	L	L	L	A	Y	E	K	T	G	Y	D	V	N	A	K	G	R	L	P	D	C	L	V	E	W	S	A
Query Conservation																								.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																								.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.	.	.	.	.	.					.	.	.	.
Template Conservation																																																																			.	.	.	.	.	.					.	.	.	.
Template Sequence		D	F	D	G	L	E	E	N	I	N	F	L	I	E	N	G	V	S	G	I	V	A	V	G	T	T	G	E	S	P	T	L	S	H	E	E	H	K	K	V	I	E	K	V	V	D	V	V	N	G	R	V	Q	V	I	A	G	A	G	S	N	C	T	E	E	.	.	.	.	.	.	A	I	E	L	.	.	.	.	S
Template Known Secondary structure																T	T		S					S	S	T	T	T	T	G	G	G	S																	T	T	S	S									S	S				.	.	.	.	.	.					.	.	.	.
Template Predicted Secondary structure																																																																			.	.	.	.	.	.					.	.	.	.
Template SS confidence
		19	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.							.	.	.	.					.
		114	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	R	L	K	E	Q	G	A	N	A	V	K	F	L	L	Y	Y	D	V	D	D	A	E	E	I	N	I	Q	K	K	A	Y	I	E	R	I	G	S	E	C	V	A	E	D	I	P	F	F	L	E	V	L	T	Y	D	D	N	I	P	D	N	G	S	V	E	F	A	K	V	K	P	R	K	V	N	E	A	M	K	L
Query Conservation
Alig confidence																										.	.	.														.	.	.																			.	.	.	.	.	.	.	.	.
Template Conservation																										.	.	.														.	.	.																			.	.	.	.	.	.	.	.	.
Template Sequence		V	F	A	E	D	V	G	A	D	A	V	L	S	I	T	P	Y	Y	N	K	P	T	Q	E	.	.	.	G	L	R	K	H	F	G	K	V	A	E	S	I	.	.	.	N	L	P	I	V	L	Y	N	V	P	S	R	T	A	V	N	L	E	.	.	.	.	.	.	.	.	.	P	K	T	V	K	L	L	A	E	E
Template Known Secondary structure								T		S									S	S						.	.	.														.	.	.	S	S												S					.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																										.	.	.														.	.	.																			.	.	.	.	.	.	.	.	.
Template SS confidence
		89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.				.	.	.	.	.	.	.	120	.	.	.	.	.				.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.										.	.	.	.	.	.	150	.	.	.
		194	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	S	E	P	R	F	N	V	D	V	L	K	V	E	V	P	V	N	M	K	Y	V	E	G	F	A	E	G	E	V	V	Y	T	K	E	E	A	A	Q	H	F	K	D	Q	D	A	A	T	H	L	P	Y	I	Y	L	S	A	G	V	S	A	E	L	F	Q	E	T	L	K	F	A	H	E	A	G	A	K	F	N	G
Query Conservation
Alig confidence				.	.	.	.							.						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.											.	.	.	.	.	.												.	.
Template Conservation				.	.	.	.							.						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.											.	.	.	.	.	.												.	.
Template Sequence		Y	S	.	.	.	.	N	I	S	A	V	K	.	E	A	N	P	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	S	Q	V	S	E	L	I	H	D	.	.	A	K	I	T	V	L	S	G	N	D	.	.	.	.	.	.	E	L	T	L	P	I	I	A	L	G	G	.	.	K	G
Template Known Secondary structure			T	.	.	.	.	T						.				S		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	T							S	S	G	.	.	.	.	.	.	G	G								T		.	.
Template Predicted Secondary structure				.	.	.	.							.						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.											.	.	.	.	.	.												.	.
Template SS confidence
		154	.					.	.	.	.	160	.		.	.	.	.	.																				.	.	.	170	.	.	.	.	.	.			.	.	.	180	.	.	.	.	.	.							.	.	.	190	.	.	.	.	.	.	.			.	.
		274	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	L	C	G	R	A	T	W	S	G	A	V	Q	V	Y	I	E	Q	G	E	D	A	A	R	E	W	L	R	T	T	G	F	K	N	I	D	D	L	N	K	V	L	K	D
Query Conservation
Alig confidence														.	.	.	.	.	.	.
Template Conservation														.	.	.	.	.	.	.
Template Sequence		V	I	S	V	V	A	N	I	V	P	K	E	.	.	.	.	.	.	.	F	V	E	M	V	N	Y	A	L	E	G	D	F	E	K	A	R	E	I	H	Y	K	L	F	P
Template Known Secondary structure					S	G	G	G	T					.	.	.	.	.	.	.											T
Template Predicted Secondary structure														.	.	.	.	.	.	.
Template SS confidence
		200	.	.	.	.	.	.	.	.	.	210	.								.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions