Return to main results Retrieve Phyre Job Id

Job DescriptionP0A011
Confidence98.21%DateTue Jul 17 17:05:03 BST 2012
Rank20Aligned Residues131
% Identity19%Templatec2v82A_
PDB info PDB header:lyaseChain: A: PDB Molecule:2-dehydro-3-deoxy-6-phosphogalactonate aldolase; PDBTitle: kdpgal complexed to kdpgal
Resolution2.1 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   113......120.........130.........140.........150.........160.........170.........180.........190..
Predicted Secondary structure 
























Query SS confidence 















































































Query Sequence  AKRLKEQGANAVKFLLYYDVDDAEEINIQKKAYIERIGSECVAEDIPFFLEVLTYDDNIPDNGSVEFAKVKPRKVNEAMK
Query Conservation 

 
 
 








    
   
    
   
  
 
 
   


 
 
 
 
                
  
  
 
Alig confidence 











.....







...........

















.................








Template Conservation 
  
   

  
.....        ...........        
     

 
.................  
   
  
Template Sequence  VDALARXGCQLI. . . . . VTPNIHSE. . . . . . . . . . . VIRRAVGYGXTVCPGCAT. . . . . . . . . . . . . . . . . ATEAFTALE
Template Known Secondary structure  TT

.....
SS

...........TT


S.................
Template Predicted Secondary structure 



.....





...........






.................
Template SS confidence 















































































   73......80.... .....90.. .......100.........110 .........
 
   193......200.........210.........220.........230.........240. ........250.........260.........270
Predicted Secondary structure 
























..











Query SS confidence 
















































. .




























Query Sequence  LFSEPRFNVDVLKVEVPVNMKYVEGFAEGEVVYTKEEAAQHFKDQDAAT. . HLPYIYLSAGVSAELFQETLKFAHEAGAK
Query Conservation       





 
   
                                ..  
 





     
   
  
  


 
Alig confidence  ......







.






................










..


.
















....


.
Template Conservation  ...... 


 
  . 
     ................              

.


 


   

   
 .... 

.
Template Sequence  . . . . . . AGAQALKI. FPSSAFG. . . . . . . . . . . . . . . . PQYIKALKAVLPSDIA. VFAVGGVTPENLAQWID. . . . AGC.
Template Known Secondary structure  ......TT
S.TT
................TTS
TT
.SS

TTT....T
.
Template Predicted Secondary structure  ......



.






................




.



....


.
Template SS confidence 















































































   120....... ..130.... .....140.........150 .........160....... ..170
 
   271........280.........290.........300.........310......
Predicted Secondary structure 






Query SS confidence 













































Query Sequence  FNGVLCGRATWSGAVQVYIEQGEDAAREWLRTTGFKNIDDLNKVLK
Query Conservation   

   

 


                 
          
     
Alig confidence  .











..........






















Template Conservation  .  
 


 
   .......... 
                  
 
Template Sequence  . AGAGLGSDLYRA. . . . . . . . . . GQSVERTAQQAAAFVKAYREAVQ
Template Known Secondary structure  .S
TTT

T..........T

Template Predicted Secondary structure  .


..........


Template SS confidence 













































   171........180.. .......190.........200.....
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions