Job Description P0A011 Confidence 94.21% Date Tue Jul 17 17:05:03 BST 2012 Rank 145 Aligned Residues 204 % Identity 14% Template c2rfgB_ PDB info PDB header:lyase Chain: B: PDB Molecule:dihydrodipicolinate synthase; PDBTitle: crystal structure of dihydrodipicolinate synthase from hahella2 chejuensis at 1.5a resolution Resolution 1.50 Å

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		48	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70															.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.
Predicted Secondary structure																									.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																									.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Q	I	E	Q	L	K	V	L	V	A	E	E	L	T	Q	Y	A	S	S	I	L	L	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	E	Y	G	L	P	A	S	D	A	R	N	K	D	C	G	L	L	L	A	Y	E	K	T	G	Y	D	V	N	A	K	G	R	L	P	D	C	L	V	E	W	S	A
Query Conservation																									.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																									.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.	.	.	.	.	.					.	.	.	.
Template Conservation																																																																			.	.	.	.	.	.					.	.	.	.
Template Sequence		D	E	K	A	L	A	G	L	V	D	W	Q	I	K	H	G	A	H	G	L	V	P	V	G	T	T	G	E	S	P	T	L	T	E	E	E	H	K	R	V	V	A	L	V	A	E	Q	A	Q	G	R	V	P	V	I	A	G	A	G	S	N	N	P	V	E	.	.	.	.	.	.	A	V	R	Y	.	.	.	.	A
Template Known Secondary structure																T	T		S				T	T	S	G	G	G	T	G	G	G	S																	T	T	S	S		B							S	S				.	.	.	.	.	.					.	.	.	.
Template Predicted Secondary structure																																																																			.	.	.	.	.	.					.	.	.	.
Template SS confidence
		19	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.							.	.	.	.					.
		114	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	R	L	K	E	Q	G	A	N	A	V	K	F	L	L	Y	Y	D	V	D	D	A	E	E	I	N	I	Q	K	K	A	Y	I	E	R	I	G	S	E	C	V	A	E	D	I	P	F	F	L	E	V	L	T	Y	D	D	N	I	P	D	N	G	S	V	E	F	A	K	V	K	P	R	K	V	N	E	A	M	K	L
Query Conservation
Alig confidence																										.	.	.														.	.	.							.	.													.	.	.	.	.	.	.										.
Template Conservation																										.	.	.														.	.	.							.	.													.	.	.	.	.	.	.										.
Template Sequence		Q	H	A	Q	Q	A	G	A	D	A	V	L	C	V	A	G	Y	Y	N	R	P	S	Q	E	.	.	.	G	L	Y	Q	H	F	K	M	V	H	D	A	I	.	.	.	D	I	P	I	I	V	.	.	Y	N	I	P	P	R	A	V	V	D	I	K	.	.	.	.	.	.	.	P	E	T	M	A	R	L	A	A	.
Template Known Secondary structure							T	T		S								T	T	T						.	.	.														.	.	.	S	S					.	.								S					.	.	.	.	.	.	.									T	.
Template Predicted Secondary structure																										.	.	.														.	.	.							.	.													.	.	.	.	.	.	.										.
Template SS confidence
		89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.				.	.	.	.	.	.	.	120	.	.	.	.	.				.	.	.	.	130	.			.	.	.	.	.	.	.	.	140	.	.	.								.	.	.	.	.	.	150	.	.
		194	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	S	E	P	R	F	N	V	D	V	L	K	V	E	V	P	V	N	M	K	Y	V	E	G	F	A	E	G	E	V	V	Y	T	K	E	E	A	A	Q	H	F	K	D	Q	D	A	A	T	H	L	P	Y	I	Y	L	S	A	G	V	S	A	E	L	F	Q	E	T	L	K	F	A	H	E	A	G	A	K	F	N	G
Query Conservation
Alig confidence		.	.	.	.									.						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.													.	.
Template Conservation		.	.	.	.									.						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.													.	.
Template Sequence		.	.	.	.	L	P	R	I	V	G	V	K	.	D	A	T	T	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	A	R	I	S	R	E	R	M	L	I	N	K	P	F	S	F	L	S	G	D	.	.	.	.	.	.	D	M	T	A	I	A	Y	N	A	S	G	G	.	.	Q	G
Template Known Secondary structure		.	.	.	.	S	T	T						.			S			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T							T	T			S							S		.	.	.	.	.	.	G	G	G							T	T		.	.
Template Predicted Secondary structure		.	.	.	.									.						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.													.	.
Template SS confidence
						153	.	.	.	.	.	.	160		.	.	.	.	.																				.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.							.	.	.	190	.	.	.	.	.	.	.	.			.	200
		274	.	.	.		.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.
Predicted Secondary structure						.
Query SS confidence						.
Query Sequence		V	L	C	G	.	R	A	T	W	S	G	A	V	Q	V	Y	I	E	Q	G	E	D	A	A	R	E	W	L	R	T	T	G	F	K	N	I	D	D	L	N	K	V	L	K	D
Query Conservation						.
Alig confidence						.									.	.	.	.	.	.	.	.
Template Conservation															.	.	.	.	.	.	.	.
Template Sequence		C	I	S	V	S	A	N	I	A	P	A	L	Y	.	.	.	.	.	.	.	.	G	Q	M	Q	T	A	T	L	Q	G	D	F	R	E	A	L	R	I	H	D	L	L	A	P
Template Known Secondary structure					S	G	G	G	T						.	.	.	.	.	.	.	.									T	T
Template Predicted Secondary structure															.	.	.	.	.	.	.	.
Template SS confidence
		201	.	.	.	.	.	.	.	.	210	.	.	.									.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions