Job Description P0A011 Confidence 91.67% Date Tue Jul 17 17:05:03 BST 2012 Rank 197 Aligned Residues 209 % Identity 14% Template c2r8wB_ PDB info PDB header:lyase Chain: B: PDB Molecule:agr_c_1641p; PDBTitle: the crystal structure of dihydrodipicolinate synthase (atu0899) from2 agrobacterium tumefaciens str. c58 Resolution 1.80 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		48	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70															.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.
Predicted Secondary structure																									.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																									.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Q	I	E	Q	L	K	V	L	V	A	E	E	L	T	Q	Y	A	S	S	I	L	L	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	E	Y	G	L	P	A	S	D	A	R	N	K	D	C	G	L	L	L	A	Y	E	K	T	G	Y	D	V	N	A	K	G	R	L	P	D	C	L	V	E	W	S	A
Query Conservation																									.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																									.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.	.	.	.	.	.					.	.	.	.
Template Conservation																																																																			.	.	.	.	.	.					.	.	.	.
Template Sequence		D	I	E	A	F	S	A	L	I	A	R	L	D	A	A	E	V	D	S	V	G	I	L	G	S	T	G	I	Y	X	Y	L	T	R	E	E	R	R	R	A	I	E	A	A	A	T	I	L	R	G	R	R	T	L	X	A	G	I	G	A	L	R	T	D	E	.	.	.	.	.	.	A	V	A	L	.	.	.	.	A
Template Known Secondary structure																T	T		S					S	S	T	T	T	T	G	G	G	S																	T	T	S	S									S	S				.	.	.	.	.	.					.	.	.	.
Template Predicted Secondary structure																																																																			.	.	.	.	.	.					.	.	.	.
Template SS confidence
		53	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.							.	.	120	.					.
		114	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	R	L	K	E	Q	G	A	N	A	V	K	F	L	L	Y	Y	D	V	D	D	A	E	E	I	N	I	Q	K	K	A	Y	I	E	R	I	G	S	E	C	V	A	E	D	I	P	F	F	L	E	V	L	T	Y	D	D	N	I	P	D	N	G	S	V	E	F	A	K	V	K	P	R	K	V	N	E	A	M	K	L
Query Conservation
Alig confidence																										.	.	.														.	.	.							.	.													.	.	.	.	.	.	.										.
Template Conservation																										.	.	.														.	.	.							.	.													.	.	.	.	.	.	.										.
Template Sequence		K	D	A	E	A	A	G	A	D	A	L	L	L	A	P	V	S	Y	T	P	L	T	Q	E	.	.	.	E	A	Y	H	H	F	A	A	V	A	G	A	T	.	.	.	A	L	P	L	A	I	.	.	Y	N	N	P	T	T	T	R	F	T	F	S	.	.	.	.	.	.	.	D	E	L	L	V	R	L	A	Y	.
Template Known Secondary structure								T		S									S	S						.	.	.														.	.	.	S	S					.	.				G	G	G	T						.	.	.	.	.	.	.									T	.
Template Predicted Secondary structure																										.	.	.														.	.	.							.	.													.	.	.	.	.	.	.										.
Template SS confidence
		123	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.				.	.	.	150	.	.	.	.	.	.	.	.	.				160	.	.	.	.	.			.	.	.	.	170	.	.	.	.	.	.	.								.	.	180	.	.	.	.	.	.
		194	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	S	E	P	R	F	N	V	D	V	L	K	V	E	V	P	V	N	M	K	Y	V	E	G	F	A	E	G	E	V	V	Y	T	K	E	E	A	A	Q	H	F	K	D	Q	D	A	A	T	H	L	P	Y	I	Y	L	S	A	G	V	S	A	E	L	F	Q	E	T	L	K	F	A	H	E	A	G	A	K	F	N	G
Query Conservation
Alig confidence		.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.													.	.
Template Conservation		.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.													.	.
Template Sequence		.	.	.	.	I	P	N	I	R	A	I	K	X	P	L	P	A	D	A	D	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	G	E	L	A	R	L	R	P	K	L	S	D	D	F	A	I	G	Y	S	G	.	.	.	.	.	.	D	W	G	C	T	D	A	T	L	A	G	G	.	.	D	T
Template Known Secondary structure		.	.	.	.	S	T	T										T	T				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								T	T	T	S		T	T								.	.	.	.	.	.										T	T		.	.	S
Template Predicted Secondary structure		.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.	.	.													.	.
Template SS confidence
						187	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.																	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.							.	.	.	.	.	230	.	.	.	.	.	.			.	.
		274	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	L	C	G	R	A	T	W	S	G	A	V	Q	V	Y	I	E	Q	G	E	D	A	A	R	E	W	L	R	T	T	G	F	K	N	I	D	D	L	N	K	V	L	K	D
Query Conservation
Alig confidence														.	.	.	.	.	.	.
Template Conservation														.	.	.	.	.	.	.
Template Sequence		W	Y	S	V	V	A	G	L	L	P	V	P	.	.	.	.	.	.	.	A	L	Q	L	X	R	A	A	Q	A	G	N	A	E	E	A	K	R	L	D	A	T	F	Q	P
Template Known Secondary structure					S	G	G	G	T					.	.	.	.	.	.	.										T	T												T
Template Predicted Secondary structure														.	.	.	.	.	.	.
Template SS confidence
		239	240	.	.	.	.	.	.	.	.	.	250								.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions