Job Description P0A011 Confidence 68.23% Date Tue Jul 17 17:05:03 BST 2012 Rank 336 Aligned Residues 193 % Identity 9% Template c2a4aB_ PDB info PDB header:lyase Chain: B: PDB Molecule:deoxyribose-phosphate aldolase; PDBTitle: deoxyribose-phosphate aldolase from p. yoelii Resolution 1.84 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		44	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.			.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.						.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.
Predicted Secondary structure																						.	.																			.	.	.	.	.
Query SS confidence																						.	.																			.	.	.	.	.
Query Sequence		P	T	V	A	Q	I	E	Q	L	K	V	L	V	A	E	E	L	T	Q	Y	.	.	A	S	S	I	L	L	D	P	E	Y	G	L	P	A	S	D	A	R	.	.	.	.	.	N	K	D	C	G	L	L	L	A	Y	E	K	T	G	Y	D	V	N	A	K	G	R	L	P	D	C	L	V	E	W	S	A	K	R	L
Query Conservation																						.	.																			.	.	.	.	.
Alig confidence																						.	.																			.	.	.	.	.											.	.	.	.	.	.
Template Conservation																																																									.	.	.	.	.	.
Template Sequence		D	E	N	G	T	E	D	D	I	R	E	L	C	N	E	S	V	K	T	C	P	F	A	A	A	V	C	V	Y	P	K	F	V	K	F	I	N	E	K	I	K	Q	E	I	N	P	F	K	P	K	I	A	C	V	I	.	.	.	.	.	.	N	F	P	Y	G	T	D	S	M	E	K	V	L	N	D	T	E	K	A
Template Known Secondary structure			T	T													T	T	S	S	S	S			S						G	G	G												S	S	S			S							.	.	.	.	.	.	S	T	T	T			S
Template Predicted Secondary structure																																																									.	.	.	.	.	.
Template SS confidence
		23	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.							.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.
		117	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.		.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.
Predicted Secondary structure																																									.
Query SS confidence																																									.
Query Sequence		K	E	Q	G	A	N	A	V	K	F	L	L	Y	Y	D	V	D	D	A	E	E	I	N	I	Q	K	K	A	Y	I	E	R	I	G	S	E	C	V	A	.	E	D	I	P	F	F	L	E	V	L	T	Y	D	D	N	I	P	D	N	G	S	V	E	F	A	K	V	K	P	R	K	V	N	E	A	M	K	L	F	S
Query Conservation																																									.
Alig confidence																												.													.								.	.			.	.	.	.	.	.	.	.	.	.
Template Conservation																												.																					.	.			.	.	.	.	.	.	.	.	.	.
Template Sequence		L	D	D	G	A	D	E	I	D	L	V	I	N	Y	K	K	I	I	E	N	T	D	E	G	L	K	.	E	A	T	K	L	T	Q	S	V	K	K	L	L	T	N	K	I	L	K	V	.	.	I	I	.	.	.	.	.	.	.	.	.	.	E	V	G	E	L	K	T	E	D	L	I	I	K	T	T	L	A	V	L
Template Known Secondary structure					T		S														S							.													T	T	T	S					.	.			.	.	.	.	.	.	.	.	.	.							S
Template Predicted Secondary structure																												.																					.	.			.	.	.	.	.	.	.	.	.	.
Template SS confidence
		97	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.		.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.			.	.											.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
		196	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.										240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.
Predicted Secondary structure																																														.	.	.	.	.	.	.	.	.
Query SS confidence																																														.	.	.	.	.	.	.	.	.
Query Sequence		E	P	R	F	N	V	D	V	L	K	V	E	V	P	V	N	M	K	Y	V	E	G	F	A	E	G	E	V	V	Y	T	K	E	E	A	A	Q	H	F	K	D	Q	D	A	.	.	.	.	.	.	.	.	.	A	T	H	L	P	Y	I	Y	L	S	A	G	V	S	A	E	L	F	Q	E	T	L	K	F	A	H	E
Query Conservation																																														.	.	.	.	.	.	.	.	.
Alig confidence		.	.										.							.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.	.																										.
Template Conservation		.	.										.							.	.	.	.	.	.	.	.	.	.																																																			.
Template Sequence		.	.	N	G	N	A	D	F	I	K	T	.	S	T	G	K	V	Q	.	.	.	.	.	.	.	.	.	.	I	N	A	T	P	S	S	V	E	Y	I	I	K	A	I	K	E	Y	I	K	N	N	P	E	K	N	N	K	I	G	L	K	V	S	G	G	I	S	D	L	N	T	A	S	H	Y	I	L	L	A	.	R
Template Known Secondary structure		.	.	T	T	T		S					.			S		S	S	.	.	.	.	.	.	.	.	.	.																							G	G	G	T	T	T							S	S			S												.
Template Predicted Secondary structure		.	.										.							.	.	.	.	.	.	.	.	.	.																																																			.
Template SS confidence
				164	.	.	.	.	.	170	.	.		.	.	.	.	.	.											.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.		.
		267	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	G	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	F	L
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		230	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions