Job Description P0A011 Confidence 97.78% Date Tue Jul 17 17:05:03 BST 2012 Rank 35 Aligned Residues 128 % Identity 20% Template c1yadD_ PDB info PDB header:transcription Chain: D: PDB Molecule:regulatory protein teni; PDBTitle: structure of teni from bacillus subtilis Resolution 2.10 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		107	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		C	L	V	E	W	S	A	K	R	L	K	E	Q	G	A	N	A	V	K	F	L	L	Y	Y	D	V	D	D	A	E	E	I	N	I	Q	K	K	A	Y	I	E	R	I	G	S	E	C	V	A	E	D	I	P	F	F	L	E	V	L	T	Y	D	D	N	I	P	D	N	G	S	V	E	F	A	K	V	K	P	R	K
Query Conservation
Alig confidence																						.	.	.	.														.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																						.	.	.	.														.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	V	M	N	G	R	V	D	I	A	L	F	S	T	I	H	R	V	Q	L	.	.	.	.	P	S	G	S	F	S	P	K	Q	I	R	A	R	.	.	.	.	.	.	.	.	.	.	.	F	P	H	L	H	I	G	R	S	V	H	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure						S							T	T	T							.	.	.	.		T	T	S										.	.	.	.	.	.	.	.	.	.	.		T	T									S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																						.	.	.	.														.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		59	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.					.	80	.	.	.	.	.	.	.	.	.	90	.												.	.	.	.	.	.	.	.	100	.	.	.
		187	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	N	E	A	M	K	L	F	S	E	P	R	F	N	V	D	V	L	K	V	E	V	P	V	N	M	K	Y	V	E	G	F	A	E	G	E	V	V	Y	T	K	E	E	A	A	Q	H	F	K	D	Q	D	A	A	T	H	L	P	Y	I	Y	L	S	A	G	V	S	A	E	L	F	Q	E	T	L	K	F	A	H	E
Query Conservation
Alig confidence		.									.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.												.	.	.	.
Template Conservation		.									.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.												.	.	.	.
Template Sequence		.	L	E	E	A	V	Q	A	E	.	.	K	E	D	A	D	Y	V	L	F	G	H	V	F	R	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	S	L	L	S	D	I	K	Q	R	I	S	I	P	V	I	A	I	G	G	.	M	T	P	D	R	L	R	D	V	K	Q	.	.	.	.
Template Known Secondary structure		.									.	.		T	T		S											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													S						S	S	.			G	G	G							.	.	.	.
Template Predicted Secondary structure		.									.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.												.	.	.	.
Template SS confidence
			104	.	.	.	.	.	110	.			.	.	.	.	.	.	.	.	120	.	.	.	.	.	.																			.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.		.	.	.	150	.	.	.	.	.	.	.
		267	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	G	A	K	F	N	G	V	L	C	G	R	A	T	W	S	G	A	V	Q	V	Y	I	E	Q	G	E	D	A	A	R	E	W	L	R	T	T
Query Conservation
Alig confidence					.	.														.	.	.	.	.	.
Template Conservation					.	.														.	.	.	.	.	.
Template Sequence		A	G	A	.	.	D	G	I	A	V	M	S	G	I	F	S	S	A	.	.	.	.	.	.	E	P	L	E	A	A	R	R	Y	S	R	K	L
Template Known Secondary structure		T	T		.	.	S					S					T	S	S	.	.	.	.	.	.	S
Template Predicted Secondary structure					.	.														.	.	.	.	.	.
Template SS confidence
		168	.	170			.	.	.	.	.	.	.	.	.	180	.	.	.							.	.	.	.	.	.	190	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions